YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4929972
Organism:	Homo sapiens
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4929972.

Description	E-value	Query Range	Subject Range
gi\|50744908 - gi\|50744908\|ref\|XP_419931.1\| PREDICTED: similar to CG12002-PA [Gallus gallus]	143.0	[0..2]	[170..251]
gi\|108879336, gi... - gi\|157108296\|ref\|XP_001650163.1\| roundabout 1 [Aedes aegypti], gi\|108879336\|gb\|EAT43561.1\| roundabou...	139.0	[0..2]	[169..153]
gi\|148228227, gi... - gi\|47940323\|gb\|AAH72368.1\| MGC84491 protein [Xenopus laevis], gi\|148228227\|ref\|NP_001085050.1\| hypot...	138.0	[0..1]	[169..232]
gi\|58377582, gi\|... - gi\|58377582\|ref\|XP_309726.2\| ENSANGP00000012640 [Anopheles gambiae str. PEST], gi\|55244345\|gb\|EAA054...	138.0	[0..2]	[169..107]
gi\|47214649 - gi\|47214649\|emb\|CAG05169.1\| unnamed protein product [Tetraodon nigroviridis]	137.0	[0..2]	[171..633]
gi\|109086388 - gi\|109086388\|ref\|XP_001108296.1\| PREDICTED: similar to peroxidasin [Macaca mulatta]	137.0	[0..2]	[170..240]
gi\|57230943, gi\|... - gi\|57230943\|tpg\|DAA05635.1\| TPA_exp: peroxidasin [Xenopus tropicalis], gi\|134085437\|ref\|NP_001076815...	137.0	[0..2]	[170..245]
gi\|28972103 - gi\|28972103\|dbj\|BAC65505.1\| mKIAA0230 protein [Mus musculus]	137.0	[0..2]	[170..205]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSQQIYGVVY GNVTFHVPSN VPLKEVLWKK QKDKVAELEN SEFRAFSSFK NRVYLDTVSG  60
   61 SLTIYNLTSS DEDEYEMESP NITDTMKFFL YVLEMVSKPM IYWECSNATL TCEVLEGTDV 120
  121 ELKLYQGKEH LRSLRQKTMS YQWTNLRAPF KCKAVNRVSQ ESEMEVVNCP E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	1cczA
Description:	CD2-binding domain of CD58, N-terminal domain; CD2-binding domain of CD58, second domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: