YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2981724, gi\|2...
Organism:	Enterobacteria phage lambda
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2981724, gi|2....

Description	E-value	Query Range	Subject Range
gi\|75256357 - gi\|75256357\|ref\|ZP_00728027.1\| hypothetical protein EcolE2_01003683 [Escherichia coli E22] gi\|75209058, gi\|... - gi\|75209058\|ref\|ZP_00709316.1\| hypothetical protein EcolB_01003738 [Escherichia coli B171], gi\|19442...	238.0	[0..3]	[228..1]
gi\|91071876, gi\|... - gi\|91210302\|ref\|YP_540288.1\| putative exonuclease encoded by prophage CP-933K [Escherichia coli UTI8... gi\|189371571, gi... - gi\|189371571\|gb\|EDU89987.1\| exonuclease [Escherichia coli O157:H7 str. EC869], gi\|168788664\|ref\|ZP_0... gi\|209361115, gi... - gi\|209447136\|ref\|YP_002274221.1\| exonuclease [Stx2-converting phage 1717], gi\|209361115\|gb\|ACI43108.... gi\|218364796, gi... - gi\|218558027\|ref\|YP_002390940.1\| exonuclease from phage origin [Escherichia coli S88], gi\|218364796\|... gi\|117623324, gi... - gi\|117623324\|ref\|YP_852237.1\| putative exonuclease encoded by prophage CP-933K [Escherichia coli APE... gi\|237706870, gi... - gi\|237706870\|ref\|ZP_04537351.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	238.0	[0..3]	[228..1]
gi\|30910925, gi\|... - gi\|49523597\|emb\|CAD88815.1\| putative exonuclease [Phage BP-4795], gi\|31044236\|ref\|NP_851950.1\| hypot...	238.0	[0..3]	[228..1]
gi\|195936770 - gi\|195936770\|ref\|ZP_03082152.1\| exonuclease [Escherichia coli O157:H7 str. EC4024] gi\|208728285, gi... - gi\|208808484\|ref\|ZP_03250821.1\| exonuclease [Escherichia coli O157:H7 str. EC4206], gi\|208728285\|gb\|... gi\|208814792, gi... - gi\|208814792\|ref\|ZP_03255971.1\| exonuclease [Escherichia coli O157:H7 str. EC4045], gi\|208731440\|gb\|... gi\|208737524, gi... - gi\|208822039\|ref\|ZP_03262358.1\| exonuclease [Escherichia coli O157:H7 str. EC4042], gi\|208737524\|gb\|... gi\|187768130, gi... - gi\|187768130\|gb\|EDU31974.1\| exonuclease [Escherichia coli O157:H7 str. EC4196], gi\|168776471\|ref\|ZP_... gi\|13360268, gi\|... - gi\|15830063\|ref\|NP_308836.1\| exonuclease [Escherichia coli O157:H7 str. Sakai], gi\|13360268\|dbj\|BAB3... gi\|168779272, gi... - gi\|189002706\|gb\|EDU71692.1\| exonuclease [Escherichia coli O157:H7 str. EC4076], gi\|168779272\|ref\|ZP_... gi\|168786943, gi... - gi\|189373198\|gb\|EDU91614.1\| exonuclease [Escherichia coli O157:H7 str. EC869], gi\|168786943\|ref\|ZP_0... gi\|189376954, gi... - gi\|189376954\|gb\|EDU95370.1\| exonuclease [Escherichia coli O157:H7 str. EC508], gi\|168800784\|ref\|ZP_0... gi\|188015485, gi... - gi\|188015485\|gb\|EDU53607.1\| exonuclease [Escherichia coli O157:H7 str. EC4113], gi\|168750276\|ref\|ZP_... gi\|189355892, gi... - gi\|189355892\|gb\|EDU74311.1\| exonuclease [Escherichia coli O157:H7 str. EC4401], gi\|168757072\|ref\|ZP_... gi\|189366442, gi... - gi\|189366442\|gb\|EDU84858.1\| exonuclease [Escherichia coli O157:H7 str. EC4501], gi\|168763373\|ref\|ZP_... gi\|189363431, gi... - gi\|189363431\|gb\|EDU81850.1\| exonuclease [Escherichia coli O157:H7 str. EC4486], gi\|168767229\|ref\|ZP_... gi\|254791930, gi... - gi\|254791930\|ref\|YP_003076767.1\| putative exonuclease encoded by prophage CP-933K [Escherichia coli ... gi\|25301749, gi\|... - pir\|\|G85580 exonuclease Z0951 [similarity] - Escherichia coli (strain O157:H7, substrain EDL933), p... gi\|209396861, gi... - gi\|209396861\|ref\|YP_002269408.1\| exonuclease [Escherichia coli O157:H7 str. EC4115], gi\|209158261\|gb... gi\|217325879, gi... - gi\|217325879\|ref\|ZP_03441963.1\| exonuclease [Escherichia coli O157:H7 str. TW14588], gi\|217322100\|gb... gi\|12513713, gi\|... - gi\|15800487\|ref\|NP_286499.1\| putative exonuclease encoded by prophage CP-933K [Escherichia coli O157... gi\|13360268, gi\|... - gi\|15830063\|ref\|NP_308836.1\| exonuclease [Escherichia coli O157:H7], gi\|13360268\|dbj\|BAB34232.1\| exo...	238.0	[0..3]	[228..1]
gi\|25301747 - pir\|\|F90775 exonuclease [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi\|209407383 - gi\|209407383\|emb\|CAQ81999.1\| exonuclease [Enterobacteria phage 2851] gi\|168799122, gi... - gi\|189378512\|gb\|EDU96928.1\| exonuclease [Escherichia coli O157:H7 str. EC508], gi\|168799122\|ref\|ZP_0... gi\|32128282, gi\|... - gi\|32171104\|ref\|NP_859348.1\| hypothetical protein Stx2IIp103 [Stx2 converting phage II], gi\|32128282... gi\|189366629, gi... - gi\|189366629\|gb\|EDU85045.1\| exonuclease [Escherichia coli O157:H7 str. EC4501], gi\|168763260\|ref\|ZP_... gi\|32128115, gi\|... - gi\|32170937\|ref\|NP_859182.1\| hypothetical protein Stx1p104 [Stx1 converting phage], gi\|32128115\|dbj\|... gi\|13360634, gi\|... - gi\|7649834\|dbj\|BAA94112.1\| exonuclease [Enterobacteria phage VT2-Sakai], gi\|15830428\|ref\|NP_309201.1... gi\|13360634, gi\|... - gi\|15830428\|ref\|NP_309201.1\| exonuclease [Escherichia coli O157:H7 str. Sakai], gi\|13360634\|dbj\|BAB3... gi\|7649834\|dbj\|B... - exonuclease [Escherichia coli O157:H7]	237.0	[0..3]	[228..1]
gi\|192956173, gi... - gi\|75234692\|ref\|ZP_00719012.1\| hypothetical protein EcolE1_01003466 [Escherichia coli E110019], gi\|1...	237.0	[0..3]	[228..1]
gi\|15554342 - gi\|15554342\|gb\|AAL02042.1\| exonuclease [Red recombinase plasmid pKD20] gi\|238861049, gi... - gi\|238903092\|ref\|YP_002928888.1\| Exonuclease [Escherichia coli BW2952], gi\|238861049\|gb\|ACR63047.1\| ... gi\|15554349 - gi\|15554349\|gb\|AAL02048.1\| exonuclease [Red recombinase plasmid pKD46] gi\|210076664 - gi\|210076664\|gb\|ACJ06685.1\| 5'-3' DNA exonuclease [Red-recombineering helper plasmid RSFRedkan] gi\|55975979 - gi\|55975979\|gb\|AAV68244.1\| exonuclease [Broad-host-range Red recombinase expression plasmid pRKcIRed... gi\|210076657 - gi\|210076657\|gb\|ACJ06679.1\| 5'-3' DNA exonuclease [Red-recombineering helper plasmid RSFRedTER] EXO_LAMBD - Exonuclease OS=Enterobacteria phage lambda GN=exo PE=1 SV=1 gi\|154918191 - gi\|154918191\|gb\|ABS88741.1\| Exo [shuttle vector pUCP18-RedS] gi\|138754322 - gi\|138754322\|emb\|CAL59727.1\| exo protein (bacteriophage lambda) [Cloning vector pSC101BADgbaA-ISceI(... tr\|A0A109ZS55\|A0... - Exonuclease OS=Escherichia coli (strain K12) GN=C3026_03970 PE=4 SV=1	237.0	[0..3]	[228..1]
gi\|213999477 - gi\|213999477\|ref\|ZP_03410212.1\| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213854864 - gi\|213854864\|ref\|ZP_03383104.1\| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213648035 - gi\|213648035\|ref\|ZP_03378088.1\| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|16759878 - gi\|16759878\|ref\|NP_455495.1\| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. CT1... gi\|16502171, gi\|... - gi\|25301752\|pir\|\|AH0617 exodeoxyribonuclease (lambda-induced) (EC 3.1.11.3) - Salmonella enterica su... gi\|29142349, gi\|... - gi\|29142349\|ref\|NP_805691.1\| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2... gi\|213609813 - gi\|213609813\|ref\|ZP_03369639.1\| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213581897 - gi\|213581897\|ref\|ZP_03363723.1\| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213424621 - gi\|213424621\|ref\|ZP_03357404.1\| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213162111 - gi\|213162111\|ref\|ZP_03347821.1\| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. ...	236.0	[0..3]	[228..1]
gi\|5881605, gi\|9... - gi\|9633409\|ref\|NP_050512.1\| exonuclease [Enterobacteria phage VT2-Sakai], gi\|5881605\|dbj\|BAA84296.1\|...	235.0	[0..3]	[228..1]
gi\|191173059, gi... - gi\|75239636\|ref\|ZP_00723603.1\| hypothetical protein EcolF_01002992 [Escherichia coli F11], gi\|191173... gi\|192958927, gi... - gi\|75238973\|ref\|ZP_00722955.1\| hypothetical protein EcolE1_01000739 [Escherichia coli E110019], gi\|1... gi\|218694196, gi... - gi\|218694196\|ref\|YP_002401863.1\| exonuclease from phage origin [Escherichia coli 55989], gi\|21835092... gi\|75189788, gi\|... - gi\|75189788\|ref\|ZP_00703055.1\| hypothetical protein EcolE_01003080 [Escherichia coli E24377A], gi\|15... gi\|110342914, gi... - gi\|110641322\|ref\|YP_669052.1\| exonuclease [Escherichia coli 536], gi\|110342914\|gb\|ABG69151.1\| exonuc...	235.0	[0..3]	[228..1]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHMTPDIILQ RTGIDVRAVE QGDDAWHKLR LGVITASEVH NVIAKPRSGK KWPDMKMSYF  60
   61 HTLLAEVCTG VAPEVNAKAL AWGKQYENDA RTLFEFTSGV NVTESPIIYR DESMRTACSP 120
  121 DGLCSDGNGL ELKCPFTSRD FMKFRLGGFE AIKSAYMAQV QYSMWVTRKN AWYFANYDPR 180
  181 MKREGLHYVV IERDEKYMAS FDEIVPEFIE KMDEALAEIG FVFGEQWR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.221849
Match:	1avqA
Description:	lambda exonuclease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.286388432783973	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: