YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|159162113, gi...
Organism:	Escherichia coli
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|159162113, gi....

Description	E-value	Query Range	Subject Range
gi\|52139629, gi\|... - gi\|52139737\|gb\|AAU29167.1\| type I fimbrial chaperone [Escherichia coli], gi\|52139715\|gb\|AAU29156.1\| ... gi\|157069440, gi... - gi\|157163760\|ref\|YP_001461078.1\| chaperone protein FimC [Escherichia coli HS], gi\|157069440\|gb\|ABV08... gi\|218556847, gi... - gi\|218556847\|ref\|YP_002389761.1\| chaperone, periplasmic [Escherichia coli IAI1], gi\|218363616\|emb\|CA...	241.0	[0..1]	[205..37]
gi\|208811930, gi... - gi\|208811930\|ref\|ZP_03253259.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208807646, gi... - gi\|208807646\|ref\|ZP_03249983.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|209749340, gi... - pir\|\|F86129 hypothetical protein fimC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|195937324 - gi\|195937324\|ref\|ZP_03082706.1\| periplasmic chaperone [Escherichia coli O157:H7 str. EC4024] gi\|168797882, gi... - gi\|189379483\|gb\|EDU97899.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC508], gi\|1687978... gi\|12519323, gi\|... - gi\|15804891\|ref\|NP_290932.1\| periplasmic chaperone, required for type 1 fimbriae [Escherichia coli O... gi\|13364753 - gi\|13364753\|dbj\|BAB38698.1\| periplasmic chaperone required for type 1 fimbriae [Escherichia coli O15... gi\|217325110, gi... - gi\|217325110\|ref\|ZP_03441194.1\| chaperone protein FimC [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|13364753 - gi\|13364753\|dbj\|BAB38698.1\| periplasmic chaperone required for type 1 fimbriae [Escherichia coli O15... gi\|209399598, gi... - gi\|209399598\|ref\|YP_002273841.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4115], gi\|2... gi\|208740859, gi... - gi\|208820736\|ref\|ZP_03261056.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|189368929, gi... - gi\|189368929\|gb\|EDU87345.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4501], gi\|168760... gi\|189357919, gi... - gi\|189357919\|gb\|EDU76338.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4401], gi\|168754... gi\|188016151, gi... - gi\|188016151\|gb\|EDU54273.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4113], gi\|168749... gi\|189374774, gi... - gi\|189374774\|gb\|EDU93190.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC869], gi\|1687849... gi\|168782827, gi... - gi\|188999747\|gb\|EDU68733.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4076], gi\|168782... gi\|187770236, gi... - gi\|187770236\|gb\|EDU34080.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4196], gi\|168773... gi\|168766591, gi... - gi\|189364320\|gb\|EDU82739.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4486], gi\|168766... gi\|254595718, gi... - gi\|254796318\|ref\|YP_003081155.1\| periplasmic chaperone, required for type 1 fimbriae [Escherichia co...	241.0	[0..1]	[205..37]
gi\|75257773 - gi\|75257773\|ref\|ZP_00729258.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E... gi\|75231736 - gi\|75231736\|ref\|ZP_00718077.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli B...	240.0	[0..1]	[205..35]
gi\|75198131 - gi\|75198131\|ref\|ZP_00708201.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli H...	240.0	[0..1]	[205..20]
gi\|38704256 - gi\|38704256\|ref\|NP_313302.2\| FimC [Escherichia coli O157:H7 str. Sakai] gi\|38704256 - gi\|38704256\|ref\|NP_313302.2\| FimC [Escherichia coli O157:H7]	240.0	[0..1]	[205..20]
gi\|82546663, gi\|... - gi\|82546663\|ref\|YP_410610.1\| periplasmic chaperone [Shigella boydii Sb227], gi\|81248074\|gb\|ABB68782....	240.0	[0..1]	[205..37]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVALGATRVI YPAGQKQEQL AVTNNDENST YLIQSWVENA DGVKDGRFIV TPPLFAMKGK  60
   61 KENTLRILDA TNNQLPQDRE SLFWMNVKAI PSMDKSKLTE NTLQLAIISR IKLYYRPAKL 120
  121 ALPPDQAAEK LRFRRSANSL TLINPTPYYL TVTELNAGTR VLENALVPPM GESTVKLPSD 180
  181 AGSNITYRTI NDYGALTPKM TGVME

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.522879
Match:	1kiuA
Description:	Periplasmic chaperone FimC; FimC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.703836445240299	bayes_pls_golite062009
protein binding	0.478023759565866	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: