YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4389213, gi\|4...
Organism:	Homo sapiens
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4389213, gi|4....

Description	E-value	Query Range	Subject Range
gi\|114649218 - gi\|114649218\|ref\|XP_509605.2\| PREDICTED: hypothetical protein [Pan troglodytes]	137.0	[0..1]	[95..132]
FLT1 - fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor recep...	137.0	[0..1]	[95..132]
gi\|109120359 - gi\|109120359\|ref\|XP_001117928.1\| PREDICTED: fms-related tyrosine kinase 1 (vascular endothelial grow...	136.0	[0..1]	[95..275]
gi\|73993482 - gi\|73993482\|ref\|XP_534520.2\| PREDICTED: similar to Vascular endothelial growth factor receptor 1 pre...	133.0	[0..1]	[95..132]
gi\|34328180, gi\|... - gi\|34328180\|ref\|NP_034358.2\| fms-related tyrosine kinase 1 [Mus musculus], gi\|2809069\|dbj\|BAA24498.1...	129.0	[0..1]	[95..133]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRPFVEMYSE IPEIIHMTEG RELVIPCRVT SPNITVTLKK FPLDTLIPDG KRIIWDSRKG  60
   61 FIISNATYKE IGLLTCEATV NGHLYKTNYL THRQT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.154902
Match:	1fltX
Description:	Second domain of the Flt-1 receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: