YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157834428, gi...
Organism:	Homo sapiens
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157834428, gi....

Description	E-value	Query Range	Subject Range
gi\|50744908 - gi\|50744908\|ref\|XP_419931.1\| PREDICTED: similar to CG12002-PA [Gallus gallus]	154.0	[0..1]	[191..243]
gi\|157129964, gi... - gi\|157129964\|ref\|XP_001655492.1\| peroxidasin [Aedes aegypti], gi\|108884375\|gb\|EAT48600.1\| peroxidasi...	151.0	[0..1]	[189..100]
gi\|109086388 - gi\|109086388\|ref\|XP_001108296.1\| PREDICTED: similar to peroxidasin [Macaca mulatta]	149.0	[0..1]	[191..232]
gi\|76661898 - gi\|76661898\|ref\|XP_593953.2\| PREDICTED: similar to CG12002-PA, isoform A [Bos taurus]	149.0	[0..3]	[192..339]
gi\|91094043 - gi\|91094043\|ref\|XP_968570.1\| PREDICTED: similar to peroxidasin [Tribolium castaneum]	149.0	[0..1]	[192..232]
gi\|57230943, gi\|... - gi\|57230943\|tpg\|DAA05635.1\| TPA_exp: peroxidasin [Xenopus tropicalis], gi\|134085437\|ref\|NP_001076815...	147.0	[0..1]	[191..237]
gi\|114620290 - gi\|114620290\|ref\|XP_519754.2\| PREDICTED: similar to peroxidasin homolog [Pan troglodytes]	147.0	[0..1]	[191..232]
gi\|73999336 - gi\|73999336\|ref\|XP_544073.2\| PREDICTED: similar to CG12002-PA, isoform A [Canis familiaris]	147.0	[0..1]	[191..60]
HGNC:14966\|MIM:6... - homolog (Drosophila) gi\|168267182, gi... - gi\|168267182\|dbj\|BAG09668.1\| peroxidasin homolog [synthetic construct], gi\|147897889\|gb\|AAI40296.1\| ... PXDN - peroxidasin homolog (Drosophila)	146.0	[0..3]	[192..342]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVFEVHVRPK KLAVEPKGSL EVNCSTTCNQ PEVGGLETSL NKILLDEQAQ WKHYLVSNIS  60
   61 HDTVLQCHFT CSGKQESMNS NVSVYQPPRQ VILTLQPTLV AVGKSFTIEC RVPTVEPLDS 120
  121 LTLFLFRGNE TLHYETFGKA APAPQEATAT FNSTADREDG HRNFSCLAVL DLMSRGGNIF 180
  181 HKHSAPKMLE IY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1zxqA
Description:	THE CRYSTAL STRUCTURE OF ICAM-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: