YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1421297, gi\|1...
Organism:	Escherichia coli
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1421297, gi|1....

Description	E-value	Query Range	Subject Range
gi\|119773809, gi... - gi\|68546609\|ref\|ZP_00586155.1\| Arginine repressor [Shewanella amazonensis SB2B], gi\|68515687\|gb\|EAN3...	103.0	[0..2]	[77..78]
ARGR_SHEFN - Arginine repressor OS=Shewanella frigidimarina (strain NCIMB 400) GN=argR PE=3 SV=1	102.0	[0..2]	[77..80]
ARGR_MANSM - Arginine repressor OS=Mannheimia succiniciproducens (strain MBEL55E) GN=argR PE=3 SV=1	102.0	[0..2]	[78..79]
ARGR_SHEB8 - Arginine repressor OS=Shewanella baltica (strain OS185) GN=argR PE=3 SV=1 ARGR_SHEB2 - Arginine repressor OS=Shewanella baltica (strain OS223) GN=argR PE=3 SV=1 ARGR_SHEB5 - Arginine repressor OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=argR PE=3 SV=1 ARGR_SHEB9 - Arginine repressor OS=Shewanella baltica (strain OS195) GN=argR PE=3 SV=1	102.0	[0..2]	[76..80]
gi\|124511428, gi... - gi\|124544785\|ref\|ZP_01704033.1\| arginine repressor, ArgR [Shewanella putrefaciens 200], gi\|124511428... ARGR_SHEPC - Arginine repressor OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=argR PE=3 SV=1 ARGR_SHESW - Arginine repressor OS=Shewanella sp. (strain W3-18-1) GN=argR PE=3 SV=1	101.0	[0..2]	[76..80]
ARGR_HAES1 - Arginine repressor OS=Haemophilus somnus (strain 129Pt) GN=argR PE=3 SV=1	101.0	[0..2]	[78..79]
ARGR_HAEIN - Arginine repressor OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=argR PE=... ARGR_HAEIN - Arginine repressor OS=Haemophilus influenzae GN=argR PE=3 SV=1	101.0	[0..2]	[78..75]
sp\|B7UJW9\|ARGR_ECO27 - Arginine repressor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=argR PE=3 SV=1 ARGR_ECOUT - Arginine repressor OS=Escherichia coli (strain UTI89 / UPEC) GN=argR PE=3 SV=1 gi\|190905882, gi... - gi\|75237908\|ref\|ZP_00721919.1\| COG1438: Arginine repressor [Escherichia coli F11], gi\|191173832\|ref\|... ARGR_ECOL6 - Arginine repressor OS=Escherichia coli O6 GN=argR PE=3 SV=1 ARGR_ECOL5 - Arginine repressor OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=argR PE=3 SV=1 gi\|109389944, gi... - gi\|109389984\|gb\|ABG29721.1\| arginine biosynthesis repressor [Escherichia coli], gi\|109389982\|gb\|ABG2... gi\|237706016, gi... - gi\|237706016\|ref\|ZP_04536497.1\| arginine repressor [Escherichia sp. 3_2_53FAA], gi\|226899056\|gb\|EEH8... gi\|227835348, gi... - gi\|227887952\|ref\|ZP_04005757.1\| arginine repressor [Escherichia coli 83972], gi\|227835348\|gb\|EEJ4581... ARGR_ECO27 - Arginine repressor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=argR PE=3 SV=1 ARGR_ECOL6 - Arginine repressor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=argR PE=3 SV=1 ARGR_ECOK1 - Arginine repressor OS=Escherichia coli O1:K1 / APEC GN=argR PE=3 SV=1 ARGR_ECO45 - Arginine repressor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=argR PE=3 SV=1 ARGR_ECO81 - Arginine repressor OS=Escherichia coli O81 (strain ED1a) GN=argR PE=3 SV=1	101.0	[0..2]	[78..80]
ARGR_HISS2 - Arginine repressor OS=Histophilus somni (strain 2336) GN=argR PE=3 SV=1	101.0	[0..2]	[78..79]
ARGR_SHESR - Arginine repressor OS=Shewanella sp. (strain MR-7) GN=argR PE=3 SV=1 ARGR_SHESM - Arginine repressor OS=Shewanella sp. (strain MR-4) GN=argR PE=3 SV=1 ARGR_SHESA - Arginine repressor OS=Shewanella sp. (strain ANA-3) GN=argR PE=3 SV=1	101.0	[0..2]	[76..80]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLKNLVLD IDYNDAVVVI HTSPGAAQLI ARLLDSLGKA EGILGTIAGD DTIFTTPANG  60
   61 FTVKDLYEAI LELFDQEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1xxaA
Description:	C-terminal domain of arginine repressor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits