YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1827863, gi\|1...
Organism:	Escherichia coli
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1827863, gi|1....

Description	E-value	Query Range	Subject Range
gi\|93456296, gi\|... - gi\|94263341\|ref\|ZP_01287156.1\| Peptidase S24, S26A and S26B [delta proteobacterium MLMS-1], gi\|93456...	158.0	[0..1]	[114..31]
gi\|117925395, gi... - gi\|69259874\|ref\|ZP_00607747.1\| Repressor lexA [Magnetococcus sp. MC-1], gi\|68245717\|gb\|EAN27832.1\| R...	153.0	[0..1]	[116..122]
gi\|56684975, gi\|... - gi\|56750016\|ref\|YP_170717.1\| DNA polymerase V [Synechococcus elongatus PCC 6301], gi\|56684975\|dbj\|BA... gi\|46129952, gi\|... - gi\|81300358\|ref\|YP_400566.1\| SOS mutagenesis protein UmuD [Synechococcus elongatus PCC 7942], gi\|811...	152.0	[0..1]	[114..72]
gi\|113907860, gi... - gi\|160875569\|ref\|YP_001554885.1\| peptidase S24/S26 domain-containing protein [Shewanella baltica OS1... gi\|153000861, gi... - gi\|153000861\|ref\|YP_001366542.1\| putative prophage repressor [Shewanella baltica OS185], gi\|15136547...	151.0	[0..1]	[115..25]
gi\|116269160, gi... - gi\|145588889\|ref\|YP_001155486.1\| putative prophage repressor [Polynucleobacter necessarius subsp. as...	151.0	[0..1]	[114..40]
gi\|68519137, gi\|... - gi\|68543163\|ref\|ZP_00582877.1\| Peptidase S24, S26A and S26B [Shewanella baltica OS155], gi\|68519137\|... gi\|217498317, gi... - gi\|217973182\|ref\|YP_002357933.1\| peptidase S24 and S26 domain protein [Shewanella baltica OS223], gi...	150.0	[0..1]	[115..25]
gi\|82741044, gi\|... - gi\|82741044\|ref\|ZP_00903774.1\| mutagenesis and repair protein [Shewanella sp. W3-18-1], gi\|82721619\|...	150.0	[0..1]	[116..32]
gi\|77543205 - gi\|77543205\|gb\|ABA87017.1\| RumA [Vibrio cholerae]	150.0	[0..1]	[116..32]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFPSPAADYV EQRIDLNQLL IQHPSATYFV KASGDSXIDG GISDGDLLIV DSAITASHGD  60
   61 IVIAAVDGEF TVKKLQLRPT VQLIPXNSAY SPITISSEDT LDVFGVVIHV VKAATR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.30103
Match:	1umuA
Description:	UmuD'
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits