YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1942937
Organism:	Drosophila melanogaster
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1942937.

Description	E-value	Query Range	Subject Range
gi\|66544429 - gi\|66544429\|ref\|XP_393233.2\| PREDICTED: similar to TBP-associated factor 6 CG32211-PA [Apis mellifer...	120.0	[0..2]	[70..7]
gi\|61553904, gi\|... - gi\|62752037\|ref\|NP_001015525.1\| TBP-associated factor 6 [Bos taurus], gi\|61553904\|gb\|AAX46477.1\| TBP...	118.0	[0..2]	[70..9]
gi\|114614971 - gi\|114614971\|ref\|XP_001139475.1\| PREDICTED: TBP-associated factor 6 [Pan troglodytes]	118.0	[0..2]	[70..9]
gi\|73957898 - gi\|73957898\|ref\|XP_546964.2\| PREDICTED: similar to Transcription initiation factor TFIID subunit 6 (...	118.0	[0..2]	[70..9]
gi\|1109650 - gi\|1109650\|dbj\|BAA08435.1\| TFIID subunit p80 [Rattus sp.] TAF6_RAT - Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus GN=Taf6 PE=1 SV=1	118.0	[0..2]	[70..9]
gi\|50949874 - gi\|50949874\|emb\|CAH10485.1\| hypothetical protein [Homo sapiens]	118.0	[0..2]	[70..9]
TAF6_MOUSE - Transcription initiation factor TFIID subunit 6 OS=Mus musculus GN=Taf6 PE=1 SV=1	118.0	[0..2]	[70..9]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYGSSISAE SMKVIAESIG VGSLSDDAAK ELAEDVSIKL KRIVQDAAKF MNHAKRQKLS  60
   61 VRDIDMSLKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1tafB
Description:	TAF(II)62
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: