YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1942936
Organism:	Drosophila melanogaster
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1942936.

Description	E-value	Query Range	Subject Range
gi\|50745551 - gi\|50745551\|ref\|XP_420153.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit 9 (...	122.0	[0..1]	[68..148]
gi\|112419415, gi... - gi\|182891744\|gb\|AAI65107.1\| Taf9 protein [Danio rerio], gi\|113205047\|ref\|NP_001037860.1\| TAF9 RNA po...	120.0	[0..1]	[68..8]
gi\|148232427, gi... - gi\|148232427\|ref\|NP_001090516.1\| enhancer of yellow 1 [Xenopus laevis], gi\|116063464\|gb\|AAI23360.1\| ...	119.0	[0..1]	[68..13]
gi\|110617761 - gi\|110617761\|gb\|ABG78598.1\| TATA binding protein associated factor 9 [Sander vitreus]	119.0	[0..1]	[68..8]
gi\|114689249 - gi\|114689249\|ref\|XP_529052.2\| PREDICTED: transcription associated factor 9B [Pan troglodytes]	119.0	[0..1]	[68..13]
gi\|74007827 - gi\|74007827\|ref\|XP_538086.2\| PREDICTED: similar to TBP-associated factor 9L isoform 1 [Canis familia...	118.0	[0..1]	[68..8]
TAF9_RAT - Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus GN=Taf9 PE=2 SV=1	118.0	[0..1]	[68..13]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKDAQVIMSI LKELNVQEYE PRVVNQLLEF TFRYVTSILD DAKVYANHAR KKTIDLDDVR  60
   61 LATEVTLD

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Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1tafA
Description:	TAF(II)42
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: