YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1421535
Organism:	Homo sapiens
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1421535.

Description	E-value	Query Range	Subject Range
gi\|148233834, gi... - gi\|71681264\|gb\|AAI00229.1\| MGC115231 protein [Xenopus laevis], gi\|148233834\|ref\|NP_001089660.1\| hypo...	156.0	[0..1]	[105..147]
gi\|89268164 - gi\|89268164\|emb\|CAJ81699.1\| Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 [Xenopus tropicalis]	156.0	[0..1]	[105..147]
gi\|66797 - gi\|66797\|pir\|\|TVFVG9 protein-tyrosine kinase (EC 2.7.1.112) yes - avian sarcoma virus Y73	154.0	[0..1]	[105..143]
gi\|223452 - gi\|223452\|prf\|\|0806225A genome Y73	154.0	[0..1]	[105..427]
gi\|63363 - gi\|63363\|emb\|CAA31595.1\| unnamed protein product [Gallus gallus]	154.0	[0..1]	[105..151]
gi\|49609370, gi\|... - gi\|61651696\|ref\|NP_001013288.1\| v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 [Danio rerio], gi...	154.0	[0..1]	[105..156]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEPEPWFFKN LSRKDAERQL LAPGNTHGSF LIRESESTAG SFSLSVRDFD QNQGEVVKHY  60
   61 KIRNLDNGGF YISPRITFPG LHELVRHYTN ASDGLCTRLS RPCQT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1lckA
Description:	p56-lck tyrosine kinase, SH3 domain; p56-lck tyrosine kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.434026084000615	bayes_pls_golite062009
protein binding	0.31534665043077	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: