YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157831610, gi...
Organism:	Escherichia coli
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157831610, gi....

Description	E-value	Query Range	Subject Range
gi\|73765411 - gi\|73765411\|gb\|AAZ85063.1\| GroEL [Bartonella sp. SE-Bart-B]	342.0	[0..12]	[203..2]
gi\|83361545, gi\|... - gi\|83368732\|ref\|ZP_00913593.1\| Chaperonin Cpn60/TCP-1 [Rhodobacter sphaeroides ATCC 17025], gi\|83361...	342.0	[0..12]	[203..185]
gi\|34391402 - gi\|34391402\|gb\|AAM77030.1\| heat shock protein Hsp60 [Bartonella schoenbuchensis]	341.0	[0..12]	[203..91]
gi\|14582862 - gi\|14582862\|gb\|AAK69694.1\|AF355773_1 60 KDa heat shock protein [Bartonella birtlesii]	341.0	[0..12]	[203..112]
CH65_RHIME, CH60... - (P35471) 60 kDa chaperonin 5 (Protein Cpn60 5) (groEL protein 5), 60 kDa chaperonin 5 OS=Rhizobium m... CH605_RHIME - 60 kDa chaperonin 5 OS=Rhizobium meliloti (strain 1021) GN=groL5 PE=2 SV=2	340.0	[0..12]	[203..185]
gi\|484347, gi\|152238 - pir\|\|JN0512 heat shock protein groEL (clone Rhz C) - Rhizobium meliloti, gi\|152238\|gb\|AAA26287.1\| g...	340.0	[0..12]	[203..185]
gi\|15420124 - gi\|15420124\|gb\|AAK97290.1\|AF304021_1 heat shock protein Hsp60 [Bartonella henselae]	340.0	[0..12]	[203..91]
gi\|46370302 - gi\|46370302\|gb\|AAS89950.1\| GroEL [Bartonella rattimassiliensis]	339.0	[0..12]	[203..125]
gi\|15420114 - gi\|15420114\|gb\|AAK97285.1\|AF304016_1 heat shock protein Hsp60 [Bartonella vinsonii subsp. arupensis]	339.0	[0..12]	[203..123]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSHHHHHH GLVPRGSEGM QFDRGYLSPY FINKPETGAV ELESPFILLA DKKISNIREM  60
   61 LPVLEAVAKA GKPLLIIAED VEGEALATLV VNTMRGIVKV AAVKAPGFGD RRKAMLQDIA 120
  121 TLTGGTVISE EIGMELEKAT LEDLGQAKRV VINKDTTTII DGVGEEAAIQ GRVAQIRQQI 180
  181 EEATSDYDRE KLQERVAKLA GGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.045757
Match:	1j4zA
Description:	Structural and mechanistic basis for allostery in the bacterial chaperonin GroEL; see remark 400
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.418936910772425	bayes_pls_golite062009
protein binding	0.20522781988963	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: