YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2392395
Organism:	Homo sapiens
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2392395.

Description	E-value	Query Range	Subject Range
gi\|114643566 - gi\|114643566\|ref\|XP_522347.2\| PREDICTED: similar to p27kip1 [Pan troglodytes]	134.0	[0..1]	[84..308]
gi\|57157156 - gi\|57157156\|dbj\|BAD83612.1\| p27Kip1R [Sus scrofa]	130.0	[0..1]	[83..23]
gi\|2842411 - gi\|2842411\|emb\|CAA59284.1\| p27 kip1 [Homo sapiens]	129.0	[0..1]	[84..23]
gi\|60654197 - gi\|60654197\|gb\|AAX29791.1\| cyclin-dependent kinase inhibitor 1B [synthetic construct]	128.0	[0..1]	[84..23]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPKPSACRNL FGPVDHEELT RDLEKHCRDM EEASQRKWNF DFQNHKPLEG KYEWQEVEKG  60
   61 SLPEFYYRPP RPPKGACKVP AQES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.09691
Match:	1jsuC
Description:	P27(KIP1) fragment 22-106
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits