YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2624702
Organism:	Homo sapiens
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2624702.

Description	E-value	Query Range	Subject Range
gi\|114665746 - gi\|114665746\|ref\|XP_511254.2\| PREDICTED: replication protein A1, 70kDa [Pan troglodytes]	276.0	[0..2]	[246..232]
gi\|62089044 - gi\|62089044\|dbj\|BAD92969.1\| replication protein A1, 70kDa variant [Homo sapiens]	274.0	[0..2]	[246..192]
gi\|115496244, gi... - gi\|115496244\|ref\|NP_001068644.1\| replication protein A1, 70kDa [Bos taurus], gi\|111308484\|gb\|AAI1998...	272.0	[0..2]	[246..178]
RFA1_PONPY - Replication protein A 70 kDa DNA-binding subunit - Pongo pygmaeus (Orangutan) RFA1_PONAB - Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1	269.0	[0..2]	[246..178]
gi\|73967216 - gi\|73967216\|ref\|XP_548316.2\| PREDICTED: similar to Replication protein A 70 kDa DNA-binding subunit ...	266.0	[0..2]	[246..178]
gi\|74214510 - gi\|74214510\|dbj\|BAE31105.1\| unnamed protein product [Mus musculus]	257.0	[0..2]	[246..208]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMQSKVVP IASLTPYQSK WTICARVTNK SQIRTWSNSR GEGKLFSLEL VDESGEIRAT  60
   61 AFNEQVDKFF PLIEVNKVYY FSKGTLKIAN KQFTAVKNDY EMTFNNETSV MPCEDDHHLP 120
  121 TVQFDFTGID DLENKSKDSL VDIIGICKSY EDATKITVRS NNREVAKRNI YLMDTSGKVV 180
  181 TATLWGEDAD KFDGSRQPVL AIKGARVSDF GGRSLSVLSS STIIANPDIP EAYKLRGWFD 240
  241 AEGQAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.30103
Match:	1jmcA
Description:	Replication protein A 70 KDa subunit (RPA70)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.141433535514844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: