YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157831419, gi...
Organism:	Homo sapiens
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157831419, gi....

Description	E-value	Query Range	Subject Range
gi\|50744908 - gi\|50744908\|ref\|XP_419931.1\| PREDICTED: similar to CG12002-PA [Gallus gallus]	177.0	[0..2]	[185..343]
gi\|76661898 - gi\|76661898\|ref\|XP_593953.2\| PREDICTED: similar to CG12002-PA, isoform A [Bos taurus]	176.0	[0..2]	[185..341]
gi\|28972103 - gi\|28972103\|dbj\|BAC65505.1\| mKIAA0230 protein [Mus musculus]	170.0	[0..2]	[185..297]
gi\|57230943, gi\|... - gi\|57230943\|tpg\|DAA05635.1\| TPA_exp: peroxidasin [Xenopus tropicalis], gi\|134085437\|ref\|NP_001076815...	170.0	[0..2]	[185..337]
HGNC:14966\|MIM:6... - homolog (Drosophila) gi\|168267182, gi... - gi\|168267182\|dbj\|BAG09668.1\| peroxidasin homolog [synthetic construct], gi\|147897889\|gb\|AAI40296.1\| ... PXDN - peroxidasin homolog (Drosophila)	169.0	[0..2]	[185..344]
gi\|47215105 - gi\|47215105\|emb\|CAF98179.1\| unnamed protein product [Tetraodon nigroviridis]	169.0	[0..2]	[185..260]
gi\|109101872 - gi\|109101872\|ref\|XP_001117852.1\| PREDICTED: similar to peroxidasin [Macaca mulatta]	167.0	[0..2]	[185..430]

Back

Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTSVSPSKVI LPRGGSVLVT CSTSCDQPKL LGIETPLPKK ELLLPGNNRK VYELSNVQED  60
   61 SQPMCYSNCP DGQSTAKTFL TVYWTPERVE LAPLPSWQPV GKQLTLRCQV EGGAPRAQLT 120
  121 VVLLRGEKEL KREPAVGEPA EVTTTVLVRR DHHGAQFSCR TELDLRPQGL ELFENTSAPY 180
  181 QLQTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1d3eI
Description:	HRV16 complexed with d1d2-ICAM-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: