YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1311362, gi\|1...
Organism:	Homo sapiens
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1311362, gi|1....

Description	E-value	Query Range	Subject Range
gi\|50750097 - gi\|50750097\|ref\|XP_421868.1\| PREDICTED: similar to fibronectin [Gallus gallus]	184.0	[0..2]	[93..1314]
gi\|34365241 - gi\|34365241\|emb\|CAE45958.1\| hypothetical protein [Homo sapiens]	182.0	[0..2]	[93..1073]
FINC_HORSE - Fibronectin (Fragment) OS=Equus caballus GN=FN1 PE=2 SV=2	181.0	[0..1]	[93..416]
gi\|74228824 - gi\|74228824\|dbj\|BAE21898.1\| unnamed protein product [Mus musculus]	179.0	[0..2]	[93..872]
FINC_CANLF - Fibronectin (Fragment) OS=Canis lupus familiaris GN=FN1 PE=2 SV=2	179.0	[0..2]	[93..417]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEKCFDHAAG TSYVVGETWE KPYQGWMMVD CTCLGEGSGR ITCTSRNRCN DQDTRTSYRI  60
   61 GDTWSKKDNR GNLLQCICTG NGRGEWKCER HTS

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Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	1fbrA
Description:	FOURTH AND FIFTH FIBRONECTIN TYPE I MODULE PAIR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits