YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3402114, gi\|3...
Organism:	Escherichia coli
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3402114, gi|3....

Description	E-value	Query Range	Subject Range
gi\|77976914, gi\|... - gi\|77976914\|ref\|ZP_00832380.1\| COG0643: Chemotaxis protein histidine kinase and related kinases [Yer...	112.0	[0..1]	[74..161]
gi\|238795647, gi... - gi\|77960500\|ref\|ZP_00824368.1\| COG0643: Chemotaxis protein histidine kinase and related kinases [Yer...	110.0	[0..1]	[74..160]
gi\|238723544, gi... - gi\|77975744\|ref\|ZP_00831278.1\| COG0643: Chemotaxis protein histidine kinase and related kinases [Yer...	110.0	[0..1]	[73..162]
gi\|238713614, gi... - gi\|77957117\|ref\|ZP_00821182.1\| COG0643: Chemotaxis protein histidine kinase and related kinases [Yer...	110.0	[0..1]	[73..160]
gi\|126219547, gi... - gi\|67738622\|ref\|ZP_00489263.1\| COG0643: Chemotaxis protein histidine kinase and related kinases [Bur...	106.0	[0..6]	[69..206]
gi\|53720916, gi\|... - gi\|53720916\|ref\|YP_109902.1\| chemotaxis two-component sensor kinase CheA [Burkholderia pseudomallei ...	106.0	[0..6]	[69..191]
gi\|194502008, gi... - gi\|99913279\|ref\|ZP_01319928.1\| hypothetical protein Bpse1_03000446 [Burkholderia pseudomallei 1655],...	106.0	[0..6]	[69..209]
Q669S8\|Q669S8_YERPS - Chemotaxis protein CheA - Yersinia pseudotuberculosis gi\|186698816, gi... - gi\|186895790\|ref\|YP_001872902.1\| chemotaxis protein CheA [Yersinia pseudotuberculosis PB1/+], gi\|186... gi\|51596728, gi\|... - gi\|51596728\|ref\|YP_070919.1\| chemotaxis protein CheA [Yersinia pseudotuberculosis IP 32953], gi\|5159...	106.0	[0..1]	[73..177]
gi\|242140164, gi... - gi\|90662207\|ref\|ZP_01250043.1\| hypothetical protein Bpse110_02006185 [Burkholderia pseudomallei 1106... gi\|126454963, gi... - gi\|126454963\|ref\|YP_001068156.1\| chemotaxis protein CheA [Burkholderia pseudomallei 1106a], gi\|12622...	106.0	[0..6]	[69..209]
gi\|76809103, gi\|... - gi\|76809103\|ref\|YP_331494.1\| chemotaxis protein CheA [Burkholderia pseudomallei 1710b], gi\|76578556\|... gi\|67755711, gi\|... - gi\|67755711\|ref\|ZP_00494602.1\| COG0643: Chemotaxis protein histidine kinase and related kinases [Bur... gi\|254259929, gi... - gi\|90292188\|ref\|ZP_01211803.1\| hypothetical protein Bpse17_02003065 [Burkholderia pseudomallei 1710a...	105.0	[0..6]	[69..209]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSPRRIIL SRLKAGEVDL LEEELGHLTT LTDVVKGADS LSAILPGDIA EDDITAVLCF  60
   61 VIEADQITFE TVEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	1fwpA
Description:	CHEY-BINDING DOMAIN OF CHEA (RESIDUES 159-227), NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits