YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1943060, gi\|1...
Organism:	Escherichia coli
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1943060, gi|1....

Description	E-value	Query Range	Subject Range
gi\|107123899 - gi\|107123899\|gb\|ABF83606.1\| heat shock protein 70 [Callinectes sapidus]	280.0	[0..1]	[216..391]
gi\|109689150 - gi\|109689150\|emb\|CAK95236.1\| 71kDa heat shock protein [Haliotis tuberculata]	279.0	[0..1]	[219..391]
gi\|3004463 - gi\|3004463\|emb\|CAA04673.1\| heat shock protein 70 [Oreochromis mossambicus]	279.0	[0..1]	[218..392]
gi\|7673686 - gi\|7673686\|gb\|AAF66987.1\| heat shock protein 70 [Wuchereria bancrofti]	277.0	[0..1]	[218..391]
gi\|74274968 - gi\|74274968\|gb\|ABA02164.1\| heat shock protein 70 [Pachygrapsus marmoratus]	277.0	[0..1]	[216..391]
gi\|42794532 - gi\|42794532\|gb\|AAS45710.1\| heat shock protein 70 [Macrobrachium rosenbergii]	277.0	[0..1]	[216..391]
gi\|47223819 - gi\|47223819\|emb\|CAF98589.1\| unnamed protein product [Tetraodon nigroviridis]	277.0	[0..1]	[218..391]
gi\|38325815 - gi\|38325815\|gb\|AAR17080.1\| heat shock protein 70-3 [Nicotiana tabacum]	277.0	[0..1]	[219..397]
gi\|74274970 - gi\|74274970\|gb\|ABA02165.1\| heat shock protein 70 [Homarus americanus]	277.0	[0..1]	[216..391]
gi\|109727161 - gi\|109727161\|gb\|ABG45886.1\| heat shock cognate 70 [Macrobrachium nipponense]	277.0	[0..1]	[216..391]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLLLDVTPLS LGIETMGGVM TTLIAKNTTI PTKHSQVFST AEDNQSAVSI HVLQGERKRA  60
   61 ADNKSLGQFN LDGINPAPRG MPQIEVTFDI DADGILHVSA KDKNSGKEQK ITIKASSGLN 120
  121 EDEIQKMVRD AEANAEADRK FEELVQTRNQ GDHLLHSTRK QVEEAGDKLP ADDKTAIESA 180
  181 LTALETALKG EDKAAIEAKM QELAQVSQKL MEIAQQQHA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.09691
Match:	1dkyA
Description:	DnaK
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits