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View Structure Prediction Details

Protein: bocksbeutel-PB
Organism: Drosophila melanogaster
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bocksbeutel-PB.

Description E-value Query
Range
Subject
Range
gi|39579415, gi|... - gi|39579415|emb|CAE56721.1| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi|187040086|em...
165.0 [0..12] [371..140]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLSYLDTL GNKELLAKCL EHGLPGVPVT DSTRSVIIRR LKAKITGVPL NKSKSASKKA  60
   61 IPRRET

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.5
Match: 1gjjA
Description: Thymopoietin, LAP2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [67-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHGSQVTTPT SEPVRRTPGK SAGRTSSNNN KISEQSRRTI AYGLDNTSIS GRSVQTTTTV  60
   61 SDMSSQSEDD DSYMVDSPVP NYSKDQQPRR YVSLAKSGVL TTSYTREVDQ P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [178-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYEQEDIPRS YTYERPHVPA ATLHALPTYE PRIEPSTYRP TDLGFSRPLL TQTNLNSTSY  60
   61 EESSTYNPKL SPISPRNTFS GSARPFGGPA PAPAPIRQRQ SVPVSGSNLA RGRLLQPTTA 120
  121 VNTLYPQLNE FYDQPNDAGE PMETESESEV EEVPINSHFQ KNRFSPLARK PLVRHHDQVS 180
  181 PMAQFRALAV SLDQKYNLKF YLILVVSVML ATMVYVVLTP NA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle