YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2982053, gi\|2...
Organism:	Homo sapiens
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2982053, gi|2....

Description	E-value	Query Range	Subject Range
gi\|109485046 - gi\|109485046\|ref\|XP_001060689.1\| PREDICTED: similar to procollagen, type XII, alpha 1 [Rattus norveg...	185.0	[0..2]	[189..133]
gi\|111074529 - gi\|111074529\|ref\|NP_031756.2\| procollagen, type XII, alpha 1 [Mus musculus]	184.0	[0..2]	[189..133]
gi\|76625444 - gi\|76625444\|ref\|XP_877415.1\| PREDICTED: similar to alpha 1 type XII collagen long isoform precursor ...	184.0	[0..2]	[189..133]
gi\|56203511, gi\|... - gi\|56203520\|emb\|CAI19907.1\| collagen, type XII, alpha 1 [Homo sapiens], gi\|56203511\|emb\|CAI19897.1\| ...	183.0	[0..2]	[189..133]
gi\|114608140 - gi\|114608140\|ref\|XP_001142912.1\| PREDICTED: collagen, type XII, alpha 1 isoform 2 [Pan troglodytes]	183.0	[0..2]	[189..133]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DCSQPLDVIL LLDGSSSFPA SYFDEMKSFA KAFISKANIG PRLTQVSVLQ YGSITTIDVP  60
   61 WNVVPEKAHL LSLVDVMQRE GGPSQIGDAL GFAVRYLTSE MHGARPGASK AVVILVTDVS 120
  121 VDSVDAAADA ARSNRVTVFP IGIGDRYDAA QLRILAGPAG DSNVVKLQRI EDLPTMVTLG 180
  181 NSFLHKLCS

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Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1fe8A
Description:	von Willebrand factor A3 domain, vWA3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits