YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1942822, gi\|1...
Organism:	Homo sapiens
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1942822, gi|1....

Description	E-value	Query Range	Subject Range
gi\|115496506, gi... - gi\|92096907\|gb\|AAI14813.1\| Aspartylglucosaminidase [Bos taurus], gi\|115496506\|ref\|NP_001068979.1\| as...	191.0	[0..1]	[141..110]
gi\|114596999 - gi\|114596999\|ref\|XP_517545.2\| PREDICTED: similar to N4-(beta-N-acetylglucosaminyl)-L- asparaginase; ...	178.0	[0..1]	[141..206]
gi\|110804827, gi... - gi\|110804827\|ref\|YP_688347.1\| L-asparaginase [Shigella flexneri 5 str. 8401], gi\|110614375\|gb\|ABF030...	177.0	[0..1]	[136..160]
gi\|183330 - gi\|183330\|gb\|AAA35903.1\| glycosylasparaginase	176.0	[0..1]	[141..206]
gi\|61368116, gi\|... - gi\|61368116\|gb\|AAX43107.1\| aspartylglucosaminidase [synthetic construct], gi\|54697120\|gb\|AAV38932.1\|...	176.0	[0..1]	[141..206]
gi\|253972806, gi... - gi\|254160905\|ref\|YP_003044013.1\| L-asparaginase [Escherichia coli B str. REL606], gi\|253972806\|gb\|AC... gi\|192928945, gi... - gi\|75257574\|ref\|ZP_00729071.1\| COG1446: Asparaginase [Escherichia coli E22], gi\|193064483\|ref\|ZP_030... gi\|218351034, gi... - gi\|218694302\|ref\|YP_002401969.1\| L-asparaginase [Escherichia coli 55989], gi\|218351034\|emb\|CAU96738.... gi\|75230676, gi\|... - gi\|75230676\|ref\|ZP_00717147.1\| COG1446: Asparaginase [Escherichia coli B7A], gi\|191166193\|ref\|ZP_030... gi\|75210576, gi\|... - gi\|75210576\|ref\|ZP_00710724.1\| COG1446: Asparaginase [Escherichia coli B171], gi\|194428244\|ref\|ZP_03... gi\|75189869, gi\|... - gi\|75189869\|ref\|ZP_00703136.1\| COG1446: Asparaginase [Escherichia coli E24377A], gi\|157155936\|ref\|YP... gi\|83586132, gi\|... - gi\|83586132\|ref\|ZP_00924769.1\| COG1446: Asparaginase [Escherichia coli 101-1], gi\|194438398\|ref\|ZP_0... gi\|209918077, gi... - gi\|209918077\|ref\|YP_002292161.1\| L-asparaginase [Escherichia coli SE11], gi\|209911336\|dbj\|BAG76410.1... gi\|218553414, gi... - gi\|218553414\|ref\|YP_002386327.1\| L-asparaginase [Escherichia coli IAI1], gi\|218360182\|emb\|CAQ97732.1... gi\|253325213, gi... - gi\|254287719\|ref\|YP_003053467.1\| L-asparaginase [Escherichia coli BL21(DE3)], gi\|253977026\|gb\|ACT426... gi\|251784347, gi... - gi\|251784347\|ref\|YP_002998651.1\| hypothetical protein B21_00812 [Escherichia coli BL21], gi\|24237662...	175.0	[0..1]	[136..179]
gi\|157065987, gi... - gi\|75194979\|ref\|ZP_00705049.1\| COG1446: Asparaginase [Escherichia coli HS], gi\|157160307\|ref\|YP_0014...	175.0	[0..1]	[136..179]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIGMVVIHKT GHIAAGTSTN GIKFKIHGRV GDSPIPGAGA YADDTAGAAA ATGNGDILMR  60
   61 FLPSYQAVEY MRRGEDPTIA CQKVISRIQK HFPEFFGAVI CANVTGSYGA ACNKLSTFTQ 120
  121 FSFMVYNSEK NQPTEEKVDC I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1apyB
Description:	HUMAN ASPARTYLGLUCOSAMINIDASE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits