YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157829644, gi...
Organism:	Homo sapiens
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157829644, gi....

Description	E-value	Query Range	Subject Range
gi\|76682377 - gi\|76682377\|ref\|XP_583000.2\| PREDICTED: similar to T-cell lymphoma-1, partial [Bos taurus]	169.0	[0..4]	[107..67]
TCL1A_MOUSE - T-cell leukemia/lymphoma protein 1A OS=Mus musculus GN=Tcl1a PE=1 SV=1	157.0	[0..2]	[105..6]
gi\|109084796 - gi\|109084796\|ref\|XP_001101341.1\| PREDICTED: similar to T-cell lymphoma-1 [Macaca mulatta]	155.0	[0..4]	[108..8]
gi\|74009211 - gi\|74009211\|ref\|XP_549385.2\| PREDICTED: similar to P13 MTCP-1 protein (Mature T-cell proliferation-1...	151.0	[0..3]	[108..2]
gi\|159162910, gi... - gi\|159162911\|pdb\|1QTU\|A Chain A, Solution Structure Of The Oncoprotein P13mtcp1, gi\|159162910\|pdb\|1Q...	150.0	[0..3]	[108..4]
gi\|109479917, gi... - gi\|157819357\|ref\|NP_001103071.1\| T-cell leukemia/lymphoma 1A [Rattus norvegicus], gi\|149025451\|gb\|ED...	150.0	[0..2]	[105..6]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSAGEDVGAP PDHLWVHQEG IYRDEYQRTW VAVVEEETSF LRARVQQIQV PLGDAARPSH  60
   61 LLTSQLPLMW QLYPEERYMD NNSRLWQIQH HLMVRGVQEL LLKLLPDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1a1xA
Description:	CRYSTAL STRUCTURE OF MTCP-1 INVOLVED IN T CELL MALIGNANCIES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.10215477176861	bayes_pls_golite062009
protein binding	0.769979871341236	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: