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View Structure Prediction Details

Protein: gi|230693, gi|15...
Organism: Homo sapiens
Length: 114 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|230693, gi|15....

Description E-value Query
Range
Subject
Range
gi|31324249 - gi|31324249|gb|AAP47198.1| membrane-acting immunotoxin fusion protein [synthetic construct]
183.0 [0..1] [111..147]
gi|84798298 - gi|84798298|gb|ABC67098.1| immunoglobulin light chain variable region YV1-4-L1-1 [Homo sapiens]
178.0 [0..1] [114..3]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESVLTQPPSA SGTPGQRVTI SCTGSATDIG SNSVIWYQQV PGKAPKLLIY YNDLLPSGVS  60
   61 DRFSASKSGT SASLAISGLE SEDEADYYCA AWNDSLDEPG FGGGTKLTVL GQPK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.69897
Match: 2rheA
Description: STRUCTURE OF A NOVEL BENCE-JONES PROTEIN (RHE) FRAGMENT AT 1.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
antigen binding 6.15874156332332 bayes_pls_golite062009
binding 1.72115469143569 bayes_pls_golite062009
receptor binding 1.67130413402976 bayes_pls_golite062009
protein binding 0.670164319686967 bayes_pls_golite062009
receptor activity 0.0554077709966088 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle