YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1310737, gi\|1...
Organism:	Homo sapiens
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1310737, gi|1....

Description	E-value	Query Range	Subject Range
gi\|17530182 - gi\|17530182\|gb\|AAL40737.1\| tissue factor/luciferase fusion protein [synthetic construct]	176.0	[0..1]	[218..33]
gi\|114557772 - gi\|114557772\|ref\|XP_001156450.1\| PREDICTED: coagulation factor III isoform 2 [Pan troglodytes]	157.0	[0..1]	[218..33]
gi\|55730565 - gi\|55730565\|emb\|CAH92004.1\| hypothetical protein [Pongo abelii] gi\|197098832 - gi\|197098832\|ref\|NP_001126163.1\| coagulation factor III (thromboplastin, tissue factor) [Pongo abeli...	156.0	[0..1]	[218..33]
gi\|339504 - gi\|339504\|gb\|AAA61151.1\| tissue factor precursor [Homo sapiens]	156.0	[0..1]	[218..33]
gi\|47523274, gi\|... - gi\|47523274\|ref\|NP_998950.1\| tissue factor [Sus scrofa], gi\|40737767\|gb\|AAR89391.1\| tissue factor [S...	154.0	[0..1]	[216..33]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGTTNTVAAY NLTWKSTNFK TILEWEPKPV NQVYTVQIST KSGDWKSKCF YTTDTECDLT  60
   61 DEIVKDVKQT YLARVFSYPA GNVESTGSAG EPLYENSPEF TPYLETNLGQ PTIQSFEQVG 120
  121 TKVNVTVEDE RTLVRRNNTF LSLRDVFGKD LIYTLYYWKS SSQEKGEFRS GKKTAKTNTN 180
  181 EFLIDVDKGE NYCFSVQAVI PSRTVNRKST DSPVECMG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	2hftA
Description:	THE CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN TISSUE FACTOR AT 1.7 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.431491932986215	bayes_pls_golite062009
protein binding	0.3642499004435	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: