YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1127056, gi\|1...
Organism:	Homo sapiens
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1127056, gi|1....

Description	E-value	Query Range	Subject Range
gi\|91094043 - gi\|91094043\|ref\|XP_968570.1\| PREDICTED: similar to peroxidasin [Tribolium castaneum]	162.0	[0..3]	[201..337]
gi\|76661898 - gi\|76661898\|ref\|XP_593953.2\| PREDICTED: similar to CG12002-PA, isoform A [Bos taurus]	161.0	[0..7]	[202..344]
gi\|74200991 - gi\|74200991\|dbj\|BAE37380.1\| unnamed protein product [Mus musculus]	159.0	[0..2]	[193..226]
gi\|50754592 - gi\|50754592\|ref\|XP_414435.1\| PREDICTED: similar to Contactin 4, isoform c precursor [Gallus gallus]	159.0	[0..2]	[195..638]
gi\|115969560 - gi\|115969560\|ref\|XP_001186212.1\| PREDICTED: similar to peroxidasin [Strongylocentrotus purpuratus]	156.0	[0..3]	[201..344]
gi\|47215105 - gi\|47215105\|emb\|CAF98179.1\| unnamed protein product [Tetraodon nigroviridis]	156.0	[0..7]	[202..263]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKIETTPESR YLAQIGDSVS LTCSTTGCES PFFSWRTQID SPLNGKVTNE GTTSTLTMNP  60
   61 VSFGNEHSYL CTATCESRKL EKGIQVEIYS FPKDPEIHLS GPLEAGKPIT VKCSVADVYP 120
  121 FDRLEIDLLK GDHLMKSQEF LEDADRKSLE TKSLEVTFTP VIEDIGKVLV CRAKLHIDEM 180
  181 DSVPTVRQAV KELQVYISPK NT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1vcaA
Description:	Second domain of vascular cell adhesion molecule-1 (VCAM-1); N-terminal domain of vascular cell adhesion molecule-1 (VCAM-1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: