YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157833849, gi...
Organism:	Homo sapiens
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157833849, gi....

Description	E-value	Query Range	Subject Range
gi\|73954161 - gi\|73954161\|ref\|XP_854982.1\| PREDICTED: similar to SPARC precursor (Secreted protein acidic and rich...	228.0	[0..1]	[151..153]
gi\|109079412 - gi\|109079412\|ref\|XP_001101364.1\| PREDICTED: secreted protein, acidic, cysteine-rich (osteonectin) [M...	227.0	[0..1]	[144..257]
gi\|1585497, gi\|6... - gi\|600381\|dbj\|BAA06029.1\| osteonectin [Rattus norvegicus], gi\|1585497\|prf\|\|2201311A osteonectin	226.0	[0..2]	[151..152]
gi\|61365991, gi\|... - gi\|61365991\|gb\|AAX42796.1\| secreted protein acidic cysteine-rich [synthetic construct], gi\|61365439\|...	226.0	[0..1]	[151..153]
SPARC - secreted protein, acidic, cysteine-rich (osteonectin) HGNC:11219\|MIM:1... - protein, acidic, cysteine-rich (osteonectin), protein, acidic, cysteine-rich (osteonectin) gi\|123993479, gi... - gi\|61355448\|gb\|AAX41141.1\| secreted protein acidic cysteine-rich [synthetic construct], gi\|60814656\|... SPRC_PONAB - SPARC OS=Pongo abelii GN=SPARC PE=2 SV=1 gi\|114602961, gi... - gi\|114602969\|ref\|XP_001168719.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114... SPRC_PONPY - SPARC precursor - Pongo pygmaeus (Orangutan)	226.0	[0..1]	[151..153]
SPRC_BOVIN - SPARC OS=Bos taurus GN=SPARC PE=1 SV=2	226.0	[0..1]	[151..153]
gi\|197102212 - gi\|197102212\|ref\|NP_001127042.1\| secreted protein, acidic, cysteine-rich (osteonectin) [Pongo abelii... gi\|55733613 - gi\|55733613\|emb\|CAH93483.1\| hypothetical protein [Pongo abelii]	226.0	[0..1]	[151..153]
SPRC_PIG - SPARC OS=Sus scrofa GN=SPARC PE=1 SV=2	226.0	[0..1]	[151..150]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPCLDSELTE FPLRMRDWLK NVLVTLYERD EDNNLLTEKQ KLRVKKIHEN EKRLEAGDHP  60
   61 VELLARDFEK NYNMYIFPVH WQFGQLDQHP IDGYLSHTEL APLRAPLIPM EHCTTRFFET 120
  121 CDLDNDKYIA LDEWAGCFGI KQKDIDKDLV I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	1bmoA
Description:	C-terminal (EC) domain of BM-40/SPARC/osteonectin; Domain of BM-40/SPARC/osteonectin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits