From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.668690938624] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
PEX10 |
|
|
|
PEX12 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
peroxisomal membrane | 1.2783E-5 | 2 | 23 | 2 | 6292 |
microbody membrane | 1.2783E-5 | 2 | 23 | 2 | 6292 |
peroxisomal part | 3.0063E-5 | 2 | 35 | 2 | 6292 |
microbody part | 3.0063E-5 | 2 | 35 | 2 | 6292 |
microbody | 8.3521E-5 | 2 | 58 | 2 | 6292 |
peroxisome | 8.3521E-5 | 2 | 58 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
peroxisome organization | 4.3504E-5 | 2 | 42 | 2 | 6292 |
protein import into peroxisome matrix | 1.9064E-3 | 2 | 6 | 1 | 6292 |
peroxisomal transport | 5.0798E-3 | 2 | 16 | 1 | 6292 |
protein targeting to peroxisome | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |