| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.24268316714] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| ATG20 |
|
|
|
| SNX41 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| endosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| pre-autophagosomal structure | 2.859E-3 | 2 | 9 | 1 | 6292 |
| peripheral to membrane of membrane fraction | 4.4455E-3 | 2 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| retrograde transport, endosome to Golgi | 8.6401E-6 | 2 | 19 | 2 | 6292 |
| endosome transport | 6.6999E-5 | 2 | 52 | 2 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phosphatidylinositol-3-phosphate binding | 8.6401E-6 | 2 | 19 | 2 | 6292 |
| phosphoinositide binding | 3.3651E-5 | 2 | 37 | 2 | 6292 |
| phospholipid binding | 4.5626E-5 | 2 | 43 | 2 | 6292 |
| lipid binding | 6.1895E-5 | 2 | 50 | 2 | 6292 |