From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.27079425823] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
PEP8 |
|
|
|
VPS5 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
retromer complex | 7.579E-7 | 2 | 6 | 2 | 6292 |
endosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein retention in Golgi apparatus | 3.9411E-6 | 2 | 13 | 2 | 6292 |
protein localization in Golgi apparatus | 3.9411E-6 | 2 | 13 | 2 | 6292 |
retrograde transport, endosome to Golgi | 8.6401E-6 | 2 | 19 | 2 | 6292 |
maintenance of protein location in cell | 1.5158E-5 | 2 | 25 | 2 | 6292 |
maintenance of protein location | 1.6421E-5 | 2 | 26 | 2 | 6292 |
maintenance of location in cell | 1.7735E-5 | 2 | 27 | 2 | 6292 |
maintenance of location | 1.9099E-5 | 2 | 28 | 2 | 6292 |
endosome transport | 6.6999E-5 | 2 | 52 | 2 | 6292 |
protein localization in organelle | 5.5711E-4 | 2 | 149 | 2 | 6292 |
cellular protein localization | 1.8898E-3 | 2 | 274 | 2 | 6292 |
cellular macromolecule localization | 2.0305E-3 | 2 | 284 | 2 | 6292 |
protein localization | 2.3118E-3 | 2 | 303 | 2 | 6292 |
vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
regulation of biological quality | 7.6561E-3 | 2 | 551 | 2 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein transporter activity | 8.3521E-5 | 2 | 58 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
phosphatidylinositol-3-phosphate binding | 6.0308E-3 | 2 | 19 | 1 | 6292 |