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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.42871184355]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

anchored to plasma membrane 3.0316E-7 2 4 2 6292
anchored to membrane 3.0316E-7 2 4 2 6292
intrinsic to plasma membrane 2.6678E-5 2 33 2 6292
plasma membrane part 8.0641E-5 2 57 2 6292
intrinsic to membrane 1.7276E-3 2 262 2 6292
plasma membrane 1.8077E-3 2 268 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

fungal-type cell wall organization 2.779E-6 2 11 2 6292
cellular cell wall organization 7.5174E-4 2 173 2 6292
external encapsulating structure organization 7.5174E-4 2 173 2 6292
cell wall organization 7.5174E-4 2 173 2 6292
cellular cell wall organization or biogenesis 1.0877E-3 2 208 2 6292
cell wall organization or biogenesis 1.0877E-3 2 208 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of cell wall 5.3053E-6 2 15 2 6292
aspartic-type endopeptidase activity 2.224E-3 2 7 1 6292
aspartic-type peptidase activity 2.224E-3 2 7 1 6292
structural molecule activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle