From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.42871184355] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
YLR194C |
|
|
|
YPS3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
anchored to plasma membrane | 3.0316E-7 | 2 | 4 | 2 | 6292 |
anchored to membrane | 3.0316E-7 | 2 | 4 | 2 | 6292 |
intrinsic to plasma membrane | 2.6678E-5 | 2 | 33 | 2 | 6292 |
plasma membrane part | 8.0641E-5 | 2 | 57 | 2 | 6292 |
intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
fungal-type cell wall organization | 2.779E-6 | 2 | 11 | 2 | 6292 |
cellular cell wall organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
external encapsulating structure organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
cell wall organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
cellular cell wall organization or biogenesis | 1.0877E-3 | 2 | 208 | 2 | 6292 |
cell wall organization or biogenesis | 1.0877E-3 | 2 | 208 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
structural constituent of cell wall | 5.3053E-6 | 2 | 15 | 2 | 6292 |
aspartic-type endopeptidase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
aspartic-type peptidase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
structural molecule activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |