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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.631194908711]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

peripheral to membrane of membrane fraction 4.5979E-6 2 14 2 6292
membrane fraction 2.0691E-4 2 91 2 6292
insoluble fraction 2.0691E-4 2 91 2 6292
cell fraction 4.1715E-4 2 129 2 6292
pre-autophagosomal structure 2.859E-3 2 9 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein transport 1.8213E-3 2 269 2 6292
establishment of protein localization 1.8485E-3 2 271 2 6292
protein localization 2.3118E-3 2 303 2 6292
protein secretion 2.859E-3 2 9 1 6292
vesicle-mediated transport 2.9119E-3 2 340 2 6292
macromolecule localization 3.9717E-3 2 397 2 6292
cortical actin cytoskeleton organization 4.7627E-3 2 15 1 6292
cortical cytoskeleton organization 4.7627E-3 2 15 1 6292
retrograde transport, endosome to Golgi 6.0308E-3 2 19 1 6292
establishment of localization in cell 9.0494E-3 2 599 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

phosphatidylinositol-3-phosphate binding 6.0308E-3 2 19 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle