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Protein Overview: JID1

General Information:
Name(s) found: JID1 / YPR061C [SGD]
Description(s) found:
Found 28 descriptions.
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  • Probable Hsp40p co-chaperone, has a DnaJ-like domain and appears to be involved in ER-associated degradation of misfolded proteins containing a tightly folded cytoplasmic domain; inhibits replication of Brome mosaic virus in S. cerevisiae [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHHKFVYPF LFKWHLSCVE KCPPQITFIA KYATANDKNG NRKLTIRDEQ WPELADPTPY  60
   61 DIFGIPKAGS GNPKLDKKSL KKKYHRYVKL YHPDHSDNIQ IFSSEKVTNS DSKSPLLLTS 120
  121 SEKLHRFKVI SQAYDILCDP KKKIVYDTTR QGWTTSYSPR SNVNTENYQY AGSYGYHSNA 180
  181 QYEYWNAGTW EDANSMKNER IQENINPWTV IGIICGLAIC IEGTALLAKI QESLSKAEFT 240
  241 HDESGLHLIQ SYTNYGLDTD KFSRLRRFLW FRTWGLYKSK EDLDREAKIN EEMIRKLKAA 300
  301 K

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) ART5 JID1 LYS12 OSH6 YHR138C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data JID1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] PSI-BLAST 28.39794 DnaJ chaperone, N-terminal (J) domain
    2 View Details [199..301] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.823553393353769 bayes_pls_golite062009
  • protein binding
    		•  0.40147996507406 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.31

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle