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Protein Overview: YDIJ_ECOLI

General Information:
Name(s) found: YDIJ_ECOLI [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • Hypothetical protein ydiJ - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 1018 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPQISQAPG VVQLVLNFLQ ELEQQGFTGD TATSYADRLT MSTDNSIYQL LPDAVVFPRS  60
   61 TADVALIARL AAQERYSSLI FTPRGGGTGT NGQALNQGII VDMSRHMNRI IEINPEEGWV 120
  121 RVEAGVIKDQ LNQYLKPFGY FFAPELSTSN RATLGGMINT DASGQGSLVY GKTSDHVLGV 180
  181 RAVLLGGDIL DTQPLPVELA ETLGKSNTTI GRIYNTVYQR CRQQRQLIID NFPKLNRFLT 240
  241 GYDLRHVFND EMTEFDLTRI LTGSEGTLAF ITEARLDITR LPKVRRLVNV KYDSFDSALR 300
  301 NAPFMVEARA LSVETVDSKV LNLAREDIVW HSVSELITDV PDQEMLGLNI VEFAGDDEAL 360
  361 IDERVNALCA RLDELIASHQ AGVIGWQVCR ELAGVERIYA MRKKAVGLLG NAKGAAKPIP 420
  421 FAEDTCVPPE HLADYIAEFR ALLDSHGLSY GMFGHVDAGV LHVRPALDMC DPQQEILMKQ 480
  481 ISDDVVALTA KYGGLLWGEH GKGFRAEYSP AFFGEELFAE LRKVKAAFDP HNRLNPGKIC 540
  541 PPEGLDAPMM KVDAVKRGTF DRQIPIAVRQ QWRGAMECNG NGLCFNFDAR SPMCPSMKIT 600
  601 QNRIHSPKGR ATLVREWLRL LADRGVDPLK LEQELPESGV SLRTLIARTR NSWHANKGEY 660
  661 DFSHEVKEAM SGCLACKACS TQCPIKIDVP EFRSRFLQLY HTRYLRPLRD HLVATVESYA 720
  721 PLMARAPKTF NFFINQPLVR KLSEKHIGMV DLPLLSVPSL QQQMVGHRSA NMTLEQLESL 780
  781 NAEQKARTVL VVQDPFTSYY DAQVVADFVR LVEKLGFQPV LLPFSPNGKA QHIKGFLNRF 840
  841 AKTAKKTADF LNRMAKLGMP MVGVDPALVL CYRDEYKLAL GEERGEFNVL LANEWLASAL 900
  901 ESQPVATVSG ESWYFFGHCT EVTALPGAPA QWAAIFARFG AKLENVSVGC CGMAGTYGHE 960
  961 AKNHENSLGI YELSWHQAMQ RLPRNRCLAT GYSCRSQVKR VEGTGVRHPV QALLEIIK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..544] PSI-BLAST 49.0 No description for 2uuuA was found.
    2 View Details [545..704] PSI-BLAST 4.69897 Fumarate reductase; Fumarate reductase iron-sulfur protein, N-terminal domain
    3 View Details [705..779] deduced N/A No confident structure predictions are available.
    4 View Details [780..857] MSA 2.452996 View MSA. No confident structure predictions are available.
    5 View Details [858..1018] MSA 7.452993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  5.01242526509414 bayes_pls_golite062009
  • succinate dehydrogenase activity
    		•  3.51223072046447 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.72328759803842 bayes_pls_golite062009
  • succinate dehydrogenase (ubiquinone) activity
    		•  2.13229308925208 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor
    		•  2.13229308925208 bayes_pls_golite062009
  • catalytic activity
    		•  1.35682608895635 bayes_pls_golite062009
  • binding
    		•  0.629227080432741 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle