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Protein Overview: SDHD_ECOLI

General Information:
Name(s) found: SDHD_ECOLI [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase) (DSD) - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 442 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENAKMNSLI AQYPLVKDLV ALKETTWFNP GTTSLAEGLP YVGLTEQDVQ DAHARLSRFA  60
   61 PYLAKAFPET AATGGIIESE LVAIPAMQKR LEKEYQQPIS GQLLLKKDSH LPISGSIKAR 120
  121 GGIYEVLAHA EKLALEAGLL TLDDDYSKLL SPEFKQFFSQ YSIAVGSTGN LGLSIGIMSA 180
  181 RIGFKVTVHM SADARAWKKA KLRSHGVTVV EYEQDYGVAV EEGRKAAQSD PNCFFIDDEN 240
  241 SRTLFLGYSV AGQRLKAQFA QQGRIVDADN PLFVYLPCGV GGGPGGVAFG LKLAFGDHVH 300
  301 CFFAEPTHSP CMLLGVHTGL HDQISVQDIG IDNLTAADGL AVGRASGFVG RAMERLLDGF 360
  361 YTLSDQTMYD MLGWLAQEEG IRLEPSALAG MAGPQRVCAS VSYQQMHGFS AEQLRNTTHL 420
  421 VWATGGGMVP EEEMNQYLAK GR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..442] PSI-BLAST 72.0 Cystathionine beta-synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cysteine synthase activity
    		•  3.05516621034881 bayes_pls_golite062009
  • catalytic activity
    		•  2.76038225023173 bayes_pls_golite062009
  • lyase activity
    		•  2.54165185299539 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  1.52790731142158 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.943946746392831 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.8463142805916 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  0.57533596285038 bayes_pls_golite062009
  • tryptophan synthase activity
    		•  0.44169275450925 bayes_pls_golite062009
  • threonine synthase activity
    		•  0.19129755094699 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle