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Protein Overview: RS1_ECOLI

General Information:
Name(s) found: RS1_ECOLI [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • 30S ribosomal protein S1 - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 557 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESFAQLFE ESLKEIETRP GSIVRGVVVA IDKDVVLVDA GLKSESAIPA EQFKNAQGEL  60
   61 EIQVGDEVDV ALDAVEDGFG ETLLSREKAK RHEAWITLEK AYEDAETVTG VINGKVKGGF 120
  121 TVELNGIRAF LPGSLVDVRP VRDTLHLEGK ELEFKVIKLD QKRNNVVVSR RAVIESENSA 180
  181 ERDQLLENLQ EGMEVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE 240
  241 ITVKVLKFDR ERTRVSLGLK QLGEDPWVAI AKRYPEGTKL TGRVTNLTDY GCFVEIEEGV 300
  301 EGLVHVSEMD WTNKNIHPSK VVNVGDVVEV MVLDIDEERR RISLGLKQCK ANPWQQFAET 360
  361 HNKGDRVEGK IKSITDFGIF IGLDGGIDGL VHLSDISWNV AGEEAVREYK KGDEIAAVVL 420
  421 QVDAERERIS LGVKQLAEDP FNNWVALNKK GAIVTGKVTA VDAKGATVEL ADGVEGYLRA 480
  481 SEASRDRVED ATLVLSVGDE VEAKFTGVDR KNRAISLSVR AKDEADEKDA IATVNKQEDA 540
  541 NFSNNAMAEA FKAAKGE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..274] PSI-BLAST 38.154902 No description for 2oceA was found.
    2 View Details [275..438] FFAS03 4.44 crystal structure of the eIF2 alpha subunit from saccharomyces cerevisia
    3 View Details [439..557] PSI-BLAST 18.221849 Crystal structure of intact alpha subunit of aIF2 from Pyrococcus abyssi

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.45319063235379 bayes_pls_golite062009
  • structural molecule activity
    		•  6.87843523680097 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.61313484113692 bayes_pls_golite062009
  • DNA binding
    		•  1.87254683997276 bayes_pls_golite062009
  • binding
    		•  1.81248034004657 bayes_pls_golite062009
  • RNA binding
    		•  1.76502371106766 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  1.40144679199104 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  1.08938787733248 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.83151863389272 bayes_pls_golite062009
  • endonuclease activity
    		•  0.795396479988128 bayes_pls_golite062009
  • excinuclease ABC activity
    		•  0.78903017411423 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.72238927168323 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.562603623565981 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.51569543713363 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.47336621289748 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.32253752994732 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.22548557495593 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0185639841733248 bayes_pls_golite062009
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.25865887570075 bayes_pls_golite062009
  • structural molecule activity
    		•  6.71426355916788 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.40696086435588 bayes_pls_golite062009
  • binding
    		•  1.72974613190175 bayes_pls_golite062009
  • DNA binding
    		•  1.70531530032581 bayes_pls_golite062009
  • RNA binding
    		•  1.63018000615308 bayes_pls_golite062009
  • translation regulator activity
    		•  1.22002670068528 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.16348298918189 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.994761133382189 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.518801208827569 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.369610293193347 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.368886987688918 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.368886987688918 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.347963475301706 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.262871056043292 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.218369788111831 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.0741372160493743 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0490728527880692 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle