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Protein Overview: SO0341

General Information:
Name(s) found: SO0341 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • sensory box protein [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 1515 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGFIGVALS QPILRLIFSV LCIISFFTVP STGLALPLNA ANTQLKFEHI RSEDGLNQNT  60
   61 ITSLFMDSAG MLWIGTQDGL HSYNGYNFNL FIHSPNDPKS ISESYVSDII QDAEGYLWVG 120
  121 SFSQGINRLD LKTGTFKRFG VEQGLTDPRV TKLNIVGNTL WIGTQSGLFS FSTRTNRLTK 180
  181 VSLGTSIEPY ITSLANVDNT YLLAGTKGSG TFAVSANTIT RLNIPQDAIA YQVKANSSRA 240
  241 ITLALGNQLW HYDLATQQGK ALWQADKNIP YIKDFIQTPE GQFWVVGPEA GLIQLEREAD 300
  301 KFVATYHQYD MKRTNSISEN NILSLLEDPF GNLWLGASYS GLNKINTRRQ YFQHLFEYTN 360
  361 ELPLQSNNVR TIYRSQDQAL WIGTEGAGLK RLAVNSTTFE HYTSFFAKAL GQQTQHLNLI 420
  421 LRSIVQDKQG ILWFASNYGL GRLTPNGEFN LLNVADSRDT SAEANYIRSL ELDNQNRLWV 480
  481 ATSHALYRKS SVNDEFTPVP LTGIENFHPI QNLLLTLKSD KNILWIGSLN GLVKLDMQTG 540
  541 HGEVFYHDPH DKNSIINNRI RDIFVASNGD TWFATHGGIS RLPAQALSPI FSDYTREQGL 600
  601 PSDTIYALLE DDDNHIWFSS NAGIGKLNPH NGKIINFNEQ EGLQALEFNG GVKLKDSDGD 660
  661 LWFGGINGIN RFNPKTLPNQ RSEARVALTA YKIAGQKQTI LDLSHPPQIV MNYADQLISF 720
  721 EVTSLDFSYP GKNRFSYFLE GFDNQWHDLP TGNEITFTNI DPGNYLLHVR HSLEYNSKGN 780
  781 YALLVNLTVK APFYRTPFAY AFYVLFTLVS MGWALRWRKQ KRSQQQEFET SIRASEERLK 840
  841 LALWASGDGM WDWNIQEQQV YRTNTDIAVP QWNGHQLLHD NAHPEDRERF KYELTEHLQG 900
  901 RSPFFEVEYR IEHSPGKWVW ILERGKVVET NAQERPIRMT GTTRNITSRK LIENELVLSS 960
  961 QVLNSMNEAV VVAGLDYRIR SVNPAFSAIT GYSEGQISDK FLIHLAYSRQ QRDLFNSIEQ1020
 1021 QLLRHKHWAG EIWIRNKARR AILVWLEINQ VIDVKGETSH FVAVFTDITE RKKAEEDLRF1080
 1081 LASFDTLTGL PNRTLFQDRL NHAISQAHRS NNIVALLFLD LDRFKHINDS MGHHIGDLLL1140
 1141 KAVAHRLQSA VREGDTVARL GGDEFTIILE GVAKTKAATL ISEKVLKAFQ APFLLDDKSL1200
 1201 NISTSIGISL YPNDAKDVDS LIKFADTAMY HAKALGRNNF QFYTNKLNEM ATRHMQLETG1260
 1261 LKQAISHNEL SLVYQPKFCL RNGSLTGLEA LLRWQHSELG PISPAEFIPL AEETGMINQI1320
 1321 GHWVINQSCQ QLAEWNELGF SDISMAVNLS ARQLKADIIS TIEVALAVSG LPAKALELEL1380
 1381 TESMIMGNPQ ESVNILSKLK ALGLTIAVDD FGTGYSSLSY LKRFPIDTLK IDREFVRDIT1440
 1441 NDPDDAAITS AIIALAHSLE LNVVAEGVET QEQLNFLALQ GCDQVQGFLL SKPLSAQDCQ1500
 1501 TLLQQRTKDR QDVKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..587] PSI-BLAST 9.69897 No description for 2cn3A was found.
    2 View Details [588..839] FFAS03 0.979 Interferon-gamma receptor alpha chain
    3 View Details [840..933] PSI-BLAST 5.522879 human ARNT C-terminal PAS domain
    4 View Details [934..1082] FFAS03 6.03 Crystal Structure of the heme PAS sensor domain of Ec DOS (ferric form)
    5 View Details [1083..1244] PSI-BLAST 25.39794 Response regulator PleD in complex with c-diGMP
    6 View Details [1245..1515] PSI-BLAST 77.69897 No description for 2r6oA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.1116076626051 bayes_pls_golite062009
  • protein binding
    		•  1.76783430571442 bayes_pls_golite062009
  • signal transducer activity
    		•  1.32097616022208 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.32097616022208 bayes_pls_golite062009
  • receptor activity
    		•  1.12145080973562 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  1.07650218318904 bayes_pls_golite062009
  • cytokine binding
    		•  0.56260777446515 bayes_pls_golite062009
  • cytokine receptor activity
    		•  0.175513940405093 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  2.11810529315597 bayes_pls_golite062009
  • protein binding
    		•  1.35116033536319 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.972708865275432 bayes_pls_golite062009
  • two-component response regulator activity
    		•  0.798874220332901 bayes_pls_golite062009
  • DNA binding
    		•  0.737759263759466 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.626552612035066 bayes_pls_golite062009
  • signal transducer activity
    		•  0.386333593205398 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.386333593205398 bayes_pls_golite062009
  • transcription factor activity
    		•  0.233622464289646 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.00745761267362077 bayes_pls_golite062009
    5
    Term Confidence Notes
  • two-component response regulator activity
    		•  1.88327307771701 bayes_pls_golite062009
  • signal transducer activity
    		•  1.7438872646629 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.7438872646629 bayes_pls_golite062009
  • two-component sensor activity
    		•  0.300567386918242 bayes_pls_golite062009
  • protein histidine kinase activity
    		•  0.276515698624029 bayes_pls_golite062009
  • binding
    		•  0.145546551776301 bayes_pls_golite062009
  • cyclase activity
    		•  0.135549728707442 bayes_pls_golite062009
  • phosphotransferase activity, nitrogenous group as acceptor
    		•  0.132981161220456 bayes_pls_golite062009
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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