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Protein Overview: TAF6_ARATH

General Information:
Name(s) found: TAF6_ARATH [Swiss-Prot]
Description(s) found:
Found 19 descriptions.
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  • Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 549 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: pollen tube growth [IMP]
    transcription initiation [ISS]
    Molecular Function: transcription initiation factor activity [IEA][ISS]
    DNA binding [IEA]
    RNA polymerase II transcription factor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVPKETVE VIAQSIGITN LLPEAALMLA PDVEYRVREI MQEAIKCMRH SKRTTLTASD  60
   61 VDGALNLRNV EPIYGFASGG PFRFRKAIGH RDLFYTDDRE VDFKDVIEAP LPKAPLDTEI 120
  121 VCHWLAIEGV QPAIPENAPL EVIRAPAETK IHEQKDGPLI DVRLPVKHVL SRELQLYFQK 180
  181 IAELAMSKSN PPLYKEALVS LASDSGLHPL VPYFTNFIAD EVSNGLNDFR LLFNLMHIVR 240
  241 SLLQNPHIHI EPYLHQLMPS VVTCLVSRKL GNRFADNHWE LRDFAANLVS LICKRYGTVY 300
  301 ITLQSRLTRT LVNALLDPKK ALTQHYGAIQ GLAALGHTVV RLLILSNLEP YLSLLEPELN 360
  361 AEKQKNQMKI YEAWRVYGAL LRAAGLCIHG RLKIFPPLPS PSPSFLHKGK GKGKIISTDP 420
  421 HKRKLSVDSS ENQSPQKRLI TMDGPDGVHS QDQSGSAPMQ VDNPVENDNP PQNSVQPSSS 480
  481 EQASDANESE SRNGKVKESG RSRAITMKAI LDQIWKDDLD SGRLLVKLHE LYGDRILPFI 540
  541 PSTEMSVFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] PSI-BLAST 29.69897 Histone H4
    2 View Details [82..248] MSA 1.04898 View MSA. No confident structure predictions are available.
    3 View Details [249..396] Pfam 60.744727 No description for PF07571.4 was found. No confident structure predictions are available.
    4 View Details [397..549] MSA 39.057997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle