YRC Public Data Repository - Protein Structure Prediction

Protein:	TAF6_ARATH
Organism:	Arabidopsis thaliana
Length:	549 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF6_ARATH.

Description	E-value	Query Range	Subject Range
gi\|34914604, gi\|... - gi\|34914604\|ref\|NP_918649.1\| putative TATA binding protein-associated factor [Oryza sativa (japonica...	645.0	[0..1]	[549..1]
gi\|2196466 - gi\|2196466\|emb\|CAA74021.1\| TATA binding protein-associated factor [Arabidopsis thaliana]	622.0	[0..1]	[524..1]
gi\|157114938, gi... - gi\|157114938\|ref\|XP_001652495.1\| transcription initiation factor TFIID subunit 6 [Aedes aegypti], gi...	557.0	[0..2]	[521..11]
gi\|51858501, gi\|... - gi\|52218960\|ref\|NP_001004557.1\| TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated fa...	545.0	[0..3]	[522..13]
gi\|220943388 - gi\|220943388\|gb\|ACL84237.1\| Taf6-PA [synthetic construct] Taf6-PA - The gene TBP-associated factor 6 is referred to in FlyBase by the symbol Dmel\Taf6 (CG32211, FBgn001...	541.0	[0..2]	[513..19]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVPKETVE VIAQSIGITN LLPEAALMLA PDVEYRVREI MQEAIKCMRH SKRTTLTASD  60
   61 VDGALNLRNV EPIYGFASGG P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1hioD
Description:	Histone H4
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [82-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRFRKAIGHR DLFYTDDREV DFKDVIEAPL PKAPLDTEIV CHWLAIEGVQ PAIPENAPLE  60
   61 VIRAPAETKI HEQKDGPLID VRLPVKHVLS RELQLYFQKI AELAMSKSNP PLYKEALVSL 120
  121 ASDSGLHPLV PYFTNFIADE VSNGLNDFRL LFNLMHIVRS LLQNPHI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [249-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HIEPYLHQLM PSVVTCLVSR KLGNRFADNH WELRDFAANL VSLICKRYGT VYITLQSRLT  60
   61 RTLVNALLDP KKALTQHYGA IQGLAALGHT VVRLLILSNL EPYLSLLEPE LNAEKQKNQM 120
  121 KIYEAWRVYG ALLRAAGLCI HGRLKIFP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.744727
Match:	PF07571.4
Description:	No description for PF07571.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [397-549]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLPSPSPSFL HKGKGKGKII STDPHKRKLS VDSSENQSPQ KRLITMDGPD GVHSQDQSGS  60
   61 APMQVDNPVE NDNPPQNSVQ PSSSEQASDA NESESRNGKV KESGRSRAIT MKAILDQIWK 120
  121 DDLDSGRLLV KLHELYGDRI LPFIPSTEMS VFL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits