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Protein Overview: RU1A_ARATH

General Information:
Name(s) found: RU1A_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 250 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    nucleolus [IDA]
    U1 snRNP [ISS]
    Biological Process: response to salt stress [IGI]
    nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK  60
   61 GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD VVAKADGTFV PREKRKRHEE 120
  121 KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF 180
  181 VQNLPHETTP MVLQMLFCQY QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ 240
  241 NQMLITYAKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] PSI-BLAST 18.30103 Splicesomal U1A protein
    2 View Details [97..157] deduced N/A No confident structure predictions are available.
    3 View Details [158..250] PSI-BLAST 15.39794 RNA BINDING DOMAIN 2 OF HUMAN U1A PROTEIN, NMR, 20 STRUCTURES


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle