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View Structure Prediction Details

Protein: RU1A_ARATH
Organism: Arabidopsis thaliana
Length: 250 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RU1A_ARATH.

Description E-value Query
Range
Subject
Range
gi|73974174 - gi|73974174|ref|XP_857615.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...
IPI00909378, tr|... - Uncharacterized protein OS=Homo sapiens GN=PABPC1 PE=4 SV=1, IPI:IPI00909378.2|TREMBL:B4DQX0;E7ERJ7|...
170.0 [0..9] [250..2]
gi|76633747 - gi|76633747|ref|XP_881817.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...
168.0 [0..9] [250..2]
PAB1_MOUSE, PABP... - Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1, (P29341) Polyadenylate-binding ...
167.0 [0..9] [250..2]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK  60
   61 GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.30103
Match: 1audA
Description: Splicesomal U1A protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [97-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKSDVVAKAD GTFVPREKRK RHEEKGGGKK KKDQHHDSTQ MGMPMNSAYP GVYGAAPPLS  60
   61 Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [158-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPYPGGMKPN MPEAPAPPNN ILFVQNLPHE TTPMVLQMLF CQYQGFKEVR MIEAKPGIAF  60
   61 VEFADEMQST VAMQGLQGFK IQQNQMLITY AKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.39794
Match: 2u1aA
Description: RNA BINDING DOMAIN 2 OF HUMAN U1A PROTEIN, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

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