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Protein Overview: gi|25320665, gi|...

General Information:
Name(s) found: gi|25320665 [NCBI NR]
gi|15219681 [NCBI NR]
gi|12322271 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • pir||H96690 probable formyl transferase F28G11.15 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15219681|ref|NP_176825.1| pde194 (pigment defective 194); catalytic/ formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase [Arabidopsis thaliana] [NCBI NR]
  • gi|12322271|gb|AAG51166.1|AC074025_16 formyl transferase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 355 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: purine ribonucleotide biosynthetic process [ISS]
    biosynthetic process [IEA][ISS]
    Molecular Function: catalytic activity [IEA]
    hydroxymethyl-, formyl- and related transferase activity [IEA][ISS]
    formyltetrahydrofolate deformylase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRRFICYN ASSTVSSIAP SPKKKPLIFL GSPQVSVSVL EALFNASNAP NSSFEVAGIV  60
   61 TQPPSRRDRG KKVLPSPVAQ YALDKGLPSD LIFSPEKAGD EAFLSALREL QPELCITAAY 120
  121 GNILPTKFLK IPVHGTVNIH PSLLPLYRGA APVQRALQDG VPETGVSLAF TVRKLDAGPV 180
  181 IASKRFQVDD LIKAPELLSF LFSEGSNLLI RELPSIFDGS AKSKAAPQDD SKATLAPKIA 240
  241 PDEAWLSFDQ EAFVLHNKVR AFAGWPGTRA KVVVLDEKSG QQNVLELKIM STRVCKDLEI 300
  301 QDSEQDYVTF KKGSLIFPCR GGTALEVLEV QLPGKKAINA AAFWNGLRGQ KLKKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..355] PSI-BLAST 89.522879 Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydroxymethyl-, formyl- and related transferase activity
    		•  5.69633962913959 bayes_pls_golite062009
  • methionyl-tRNA formyltransferase activity
    		•  5.65386414092027 bayes_pls_golite062009
  • methyltransferase activity
    		•  2.76628443233732 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  2.70337357342253 bayes_pls_golite062009
  • catalytic activity
    		•  2.53047786804923 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  2.44659532474253 bayes_pls_golite062009
  • ligase activity
    		•  1.96240394924455 bayes_pls_golite062009
  • transferase activity
    		•  1.21569993951472 bayes_pls_golite062009
  • DNA N-glycosylase activity
    		•  0.44549344555131 bayes_pls_golite062009
  • phosphoribosylglycinamide formyltransferase activity
    		•  0.274274040236549 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing N-glycosyl compounds
    		•  0.260905445900329 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle