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Protein Overview: RT19_ARATH

General Information:
Name(s) found: RT19_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|21542438|sp|P39697.2|RT19_ARATH RecName: Full=40S ribosomal protein S19, mitochondrial; Flags: Precursor [NCBI NR]
  • gi|20259155|gb|AAM14293.1| putative 40S ribosomal protein S19 [Arabidopsis thaliana] [NCBI NR]
  • gi|18422781|ref|NP_568681.1| RPS19 (RIBOSOMAL PROTEIN S19); RNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|15028321|gb|AAK76637.1| putative 40S ribosomal protein S19 [Arabidopsis thaliana] [NCBI NR]
  • 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2 [Swiss-Prot]
  • (P39697) 40S ribosomal protein S19, mitochondrial precursor [athaliana3702.FASTAC.txt]
  • putative 40S ribosomal protein S19 [Arabidopsis thaliana]gi|15028321|gb|AAK76637.1| putative 40S ribosomal protein S19 [Arabidopsis thaliana]gi|18422781|ref|NP_568681.1| 30S ribosomal protein S19, mitochondrial (RPS19) [Arabidopsis thaliana]gi|21542438 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 40S ribosomal protein S19, mitochondrial precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: RPS19 | RPS19 (40S ribosomal protein S19); RNA binding | chr5:19221028-19222178 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RPS19; RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative 40S ribosomal protein S19 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 40S ribosomal protein S19, mitochondrial precursor [nr-271106-contam.fasta]
  • | Symbols: RPS19 | ribosomal protein S19 | chr5:19203801-19204951 FORWARD LENGTH=212 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 212 amino acids

    Gene Ontology:
    Cellular Component: mitochondrial small ribosomal subunit [IDA]
    Biological Process: translation [NAS]
    Molecular Function: RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFCTKLGGH WKQGVNVPVS SMLGSLRYMS TKLYIGGLSP GTDEHSLKDA FSSFNGVTEA  60
   61 RVMTNKVTGR SRGYGFVNFI SEDSANSAIS AMNGQELNGF NISVNVAKDW PSLPLSLDES 120
  121 IEEAEKKENK MMSRSVWKDP FVDAFLMKKK NAALNRKIWS RRSTILPEYV DSAVRIYNGK 180
  181 THVRCKITEG KVGHKFGEFA FTRKVKKHAK AK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..212] PSI-BLAST 32.522879 HNRNP A1 (RBD1,2) FROM HOMO SAPIENS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural molecule activity
    		•  5.14791608992418 bayes_pls_golite062009
  • RNA binding
    		•  4.50438526063124 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.2381342715237 bayes_pls_golite062009
  • binding
    		•  3.06679562635705 bayes_pls_golite062009
  • mRNA binding
    		•  2.92795844574986 bayes_pls_golite062009
    		• 1.49431666307335 bayes_pls_golite062009
  • protein binding
    		•  1.32954276279597 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.90573796517364 bayes_pls_golite062009
  • translation regulator activity
    		•  0.38120065819101 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.32812362201346 bayes_pls_golite062009
  • DNA binding
    		•  0.139020718026377 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.128616879457381 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0995666109361987 bayes_pls_golite062009
  • snoRNA binding
    		•  0.0568636182001701 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle