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Protein Overview: AGL3_ARATH

General Information:
Name(s) found: AGL3_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 258 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: petal development [IMP]
    carpel development [IMP]
    maintenance of floral meristem identity [IMP]
    stamen development [IMP]
    sepal development [IMP]
    regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [TAS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS  60
   61 PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS RVEILQHSQR HLLGEELSEM 120
  121 DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT 180
  181 QSFWGSSAAE QQQQHQQQQQ GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT 240
  241 NSATTSQNVN GFFPGWMV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] PSI-BLAST 20.522879 Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
    2 View Details [83..183] Pfam 26.853872 No description for PF01486.8 was found. Confident ab initio structure predictions are available.
    3 View Details [184..258] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.47820295830817 bayes_pls_golite062009
  • DNA binding
    		•  4.34885522982729 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.22473647889076 bayes_pls_golite062009
  • binding
    		•  3.73009730829487 bayes_pls_golite062009
  • transcription factor activity
    		•  3.68208249443337 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.65616273505159 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.72567983955215 bayes_pls_golite062009
  • transcription activator activity
    		•  1.38059870614713 bayes_pls_golite062009
  • protein binding
    		•  1.27646601063623 bayes_pls_golite062009
  • DNA bending activity
    		•  0.167327205417291 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle