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Protein Overview: snx12

General Information:
Name(s) found: snx12 / SPCC16A11.04 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • sorting nexin Snx12 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1010 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [ISSLink to PubMed article]
    integral to membrane [IEA]
    Biological Process: mitochondrion inheritance [ISSLink to PubMed article]
    vesicle-mediated transport [ISSLink to PubMed article]
    Molecular Function: phosphoinositide binding [ISSLink to PubMed article]
    structural constituent of cytoskeleton [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQQHIFYFI TGGIFILWIL AHSFFVKIIY LWASGCLLWY CLETRTFENK NNLGTSEPFL  60
   61 VNPAIFQKRA RQLALSKLLL RQPLYPGIPE ISEEIESIIS HFMQKYIKVW SYQIIPEPTI 120
  121 SNSIESHLRK CLMVLLSRVD EIDLADVLVK TVLPLITKHL RLFVEAEQLV VGNKAVSFTD 180
  181 HSELSREVAA KYDHGRLHEA VLLSGNPMVA QKRYLRNWTT QVLSIILPNY YETSPLVLSL 240
  241 VTEVIINTTL LPLVSYISDP DFFNYLIIQA SGSIIQRRRK IRRLKRAIRK QSNHFQVGAR 300
  301 RLRLKDSQHS FEQYIHEIKK ISNISDARRL RSELMVQRRQ LEQTEAFDFE FKQYRERLQI 360
  361 AIITAEKRIS LLSGTPFQHK EAVLFEQVQS LLQILSDSAA VSCFLEFMER KNRSRYLHFW 420
  421 LVVEGLKESQ DDPLNAHMIA PFSDIVSDHT DFTAIVKSYF ESVDNPLDIP KPLTNTINKF 480
  481 VNQSKDNLNP DLWVEARNAM LMAQEHVFDI MQNSDYSEFV NSEIYYRFLA QDVVSDHKST 540
  541 NSSATFSRLE ELGENIPAIS KQPSYLSISS SSKSINSSPS PSIQLSVSSS ISRDKNLSPL 600
  601 DLELDDPTYS DEEEVLFAPP GDLQLSESID ELNNNIEELK AQLNAINTLI KKAELVADQK 660
  661 QLKSLTKNHQ EIEKAIHRKE RQRDQYMSQE EDSKLFNRSR VSIDSFKISK EENTPDFAVY 720
  721 TIRIERLENG HVRSGWMVAR RYREFAELHK QLKQTYPGVR SLKFPQKSII TSLNKNVLEY 780
  781 RRGALEEYLQ SLFRMPEVCD SKMLRMFLSQ QNITAPQMFN PKEVGKKWKQ LLEVLGFEVN 840
  841 NSFNASNVNT NSSFSGPISE FLVELFSPND DAKQQWLPKK TYISILEQLF GGALEKRIRL 900
  901 QLFQLFTPEK IYRKLREFRR GLEGKSNHDH SKDRRHSRAR KPAYADRNQL KAEAGILLAS 960
  961 MFPGYTPDIA VKRIFRILQN QSLNAHVIYT LLDEILLALK KHARSTNKAT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] deduced N/A No confident structure predictions are available.
    2 View Details [84..305] Pfam 7.552842 No description for PF02194.6 was found. No confident structure predictions are available.
    3 View Details [306..550] PSI-BLAST 29.39794 Regulator of G-protein signalling 4, RGS4
    4 View Details [551..691] deduced N/A No confident structure predictions are available.
    5 View Details [692..1010] PSI-BLAST 23.30103 No description for 2dybA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.56462084128628 bayes_pls_golite062009
  • protein binding
    		•  1.55542857306536 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  1.13899380938509 bayes_pls_golite062009
  • GTPase regulator activity
    		•  1.11716566045476 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.930307440055454 bayes_pls_golite062009
  • GTPase activator activity
    		•  0.845105141539921 bayes_pls_golite062009
  • enzyme activator activity
    		•  0.830104847091967 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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