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Protein Overview: SPBC11C11.01

General Information:
Name(s) found: SPBC11C11.01 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • RNA-binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 493 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    U2 snRNP [ISS]
    Biological Process: nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNNERVNT NPSLISKSYN MKKRPVIGTR RHFARKEIES DSDDEDDIFL AGERKKYLQN  60
   61 QSYERRKQKY VWSFNNITKS VIRNEHGNNL TLQEELLRHE AYEKNEEIAN ENDVDQGMFI 120
  121 QQNNILNMLV NLMKYFVHMD NISPVTTNGS LKESLRKYSS IIAVNIFSET GDLKKGIAIF 180
  181 QDLSDAEQAV QYLSNCKIDG RLISATITNH PKRLPNAEHL ESSTKTKDES QDKDKLTKLD 240
  241 RAKLEWLIQG LNCEKGSIGN LLCFAVEHVN NHVEITDAFL KEFFNDQPTD DTKVYDDDYI 300
  301 NERGEKKLSL IYLMNDILFN GISGTSLVWR YRFSFEPHVE RLLDDLYLFS KRLGGRIKED 360
  361 IFCKKVVKVI EVWKTWIAFQ EETLERAWRN FSGNTPQSPQ INSAALKVET KNSWTAISEE 420
  421 TEGLQDDEEY NGIPVDVNEL LNVEFISQIP MSTETSSSSS PQPTEERKAK FKPSFTQGTF 480
  481 VSKRMRMHAE DLF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] PSI-BLAST 33.39794 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    2 View Details [251..401] PSI-BLAST 7.30103 No description for 2diwA was found.
    3 View Details [402..493] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.26550630643712 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.02897811404491 bayes_pls_golite062009
  • RNA binding
    		•  1.45577328897026 bayes_pls_golite062009
  • mRNA binding
    		•  0.274978159646657 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle