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Protein Overview: tbp1

General Information:
Name(s) found: tbp1 / SPAC29E6.08 [Sanger Pombe]
Description(s) found:
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  • gi|6723895|emb|CAB66471.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|295936|emb|CAA37494.1| TFIID [Schizosaccharomyces pombe] [NCBI NR]
  • pir||A35873 transcription initiation factor IID [similarity] - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|226987|prf||1612348A transcription factor IID [NCBI NR]
  • gi|19115478|ref|NP_594566.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|135639|sp|P17871.1|TBP_SCHPO RecName: Full=TATA-box-binding protein; AltName: Full=TATA-box factor; AltName: Full=TATA-binding factor; AltName: Full=TATA sequence-binding protein; Short=TBP; AltName: Full=Transcription initiation factor TFIID TBP subun [NCBI NR]
  • gi|1044934|emb|CAA91430.1| transcription initiation factor tfiid [Schizosaccharomyces pombe] [NCBI NR]
  • TATA-binding protein (TBP) [Sanger Pombe]
  • TATA-box-binding protein OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1 [Swiss-Prot]
  • TATA-BINDING PROTEIN TBP; TRANSCRIPTION INITIATION FACTOR TFIID; TRANSCRIPTION FACTOR TFIIIB SUBUNIT: ;N0ACC; [pompepVF.fasta]
  • TATA-BINDING PROTEIN TBP; TRANSCRIPTION INITIATION FACTOR TFIID: O14126;P17871; [pompepV13]
  • TATA-box binding protein (TATA-box factor) (TATA binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) [pompep4896]
  • |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein TBP [pompepnew.fasta]
  • Transcription initiation factor TFIID (TATA-box factor) (TATA sequence-binding protein) (TBP) [hmr_yeast5_DM3-1_pombe.fasta]
  • |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein (TBP)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • transcription initiation factor tfiid [Schizosaccharomyces pombe]gi|1044934|emb|CAA91430.1| transcription initiation factor tfiid [Schizosaccharomyces pombe]gi|295936|emb|CAA37494.1| TFIID [Schizosaccharomyces pombe]gi|6723895|emb|CAB66471.1| tdf1 [Sch [nrdb_11152004_Chlamydomonas]
  • (P17871) TATA-box binding protein (TATA-box factor) (TATA binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) [pompep4896_normal_reversed]
  • SPAC29E6.08 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • transcription factor IID [nr-271106-contam.fasta]
  • transcription initiation factor tfiid [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC29E6.08 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • TFIID [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) [nr-271106-contam.fasta]
  • TATA-box-binding protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tbp1 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    RNA polymerase I transcription factor complex [ISSLink to PubMed article]
    transcription factor TFIID complex [ISSLink to PubMed article]
    transcription factor TFIIIB complex [ISSLink to PubMed article]
    Biological Process: transcription initiation from RNA polymerase III promoter [ISSLink to PubMed article]
    transcription from RNA polymerase I promoter [ISSLink to PubMed article]
    regulation of transcription [ICLink to PubMed article]
    transcription initiation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    RNA polymerase I transcription factor activity [ISSLink to PubMed article]
    general RNA polymerase II transcription factor activity [ISSLink to PubMed article]
    RNA polymerase III transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFALPTTAS QASAFMNNSS LTFPVLPNAN NEATNETADS GDAEVSKNEG VSGIVPTLQN  60
   61 IVATVNLDCR LDLKTIALHA RNAEYNPKRF AAVIMRIREP KSTALIFASG KMVVLGGKSE 120
  121 DDSKLASRKY ARIIQKLGFN AKFTDFKIQN IVGSCDVKFP IRLEGLAYSH GTFSSYEPEL 180
  181 FPGLIYRMVK PKVVLLIFVS GKIVLTGAKV REEIYQAFEA IYPVLSEFRK H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..231] PSI-BLAST 84.522879 Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  10.1927670598446 bayes_pls_golite062009
  • RNA polymerase III transcription factor activity
    		•  8.4318102330583 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.66773099672992 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.97397050058114 bayes_pls_golite062009
  • DNA binding
    		•  3.68758425895596 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.4119217152884 bayes_pls_golite062009
  • binding
    		•  3.25203283623613 bayes_pls_golite062009
  • RNA polymerase I transcription factor activity
    		•  3.24777019705869 bayes_pls_golite062009
  • transcription factor activity
    		•  2.17821704710246 bayes_pls_golite062009
  • transcription factor binding
    		•  1.86204668268867 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.59579825271822 bayes_pls_golite062009
  • protein binding
    		•  0.938536348073543 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.312991469396539 bayes_pls_golite062009
  • transcription activator activity
    		•  0.199341831249925 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle