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Protein Overview: cut3

General Information:
Name(s) found: cut3 / SPBC146.03c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • condensin subunit Cut3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1324 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    inner kinetochore of condensed chromosome [IGILink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [IGILink to PubMed article]
    condensin complex [IDALink to PubMed article]
    Biological Process: mitotic chromosome condensation [IMPLink to PubMed article]
    mitotic sister chromatid segregation [IMPLink to PubMed article]
    cellular protein localization [ISSLink to PubMed article]
    Molecular Function: ATP binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKGIFRTS STPSIVDVTP DRGERPRKLV RSVLESPSQK DVASIVKIEQ TPSRPFFNDF  60
   61 LKKRITDSLN ERPNLLNKFM SAQDGTPSKS TGFNERSSQL VSEFTTTEDI ENCEETTQVL 120
  121 PPRLVVYELR LTNFKSYAGT QIVGPFHPSF SSIVGPNGSG KSNVIDALLF VFGFRASKLR 180
  181 QSKASALIHK SATHPSLDSC DVEITFKEVN SDFTYVDGSE LTVRRTAYKN NTSKYFVNGV 240
  241 ESSFSAVSNL LKEKGIDLNH KRFLILQGEV ESIAQMKPRA ISEGDDGLLE YLEDIIGTSK 300
  301 YKPIIEENMQ ELSNSDDICA EKESRLKLVL SEKAKLEDSK NSVLSFLKDE NELFMKQNQL 360
  361 YRTILYETRN KKTLVQNLLN SLEGKLQAHL EKFEQTERDI SEKNEEVKSL REKAAKVKND 420
  421 CTSEKKTRQS YEQQTVKIEE QLKFLLNKEK KLKKSIEALS FEKSEAENSL SSHDIDSQKL 480
  481 NSEIADLSLR LQQEELSLDD IRKSLQGKTE GISNAIEEKQ KAMAPALEKI NQLTSEKQIL 540
  541 QVELDMLLNK ENDLINDVES SQSSLDKLRN DAEENRNILS SKLKVLSDLK GEKKDVSKNI 600
  601 ERKKETVHNT YRNLMSNRTK LEEMKASLSS SRSRGNVLES LQRLHESDNL NGFFGRLGDL 660
  661 ATIDEAYDVA ISTACPALNH IVVDNIETGQ KCVAFLRSNN LGRASFIILK ELAQKNLARI 720
  721 QTPENVPRLF DLLRFNDQKF APAFYNVLQN TLVAKNLEQA NRIAYGKTRW RVVTLSGQLI 780
  781 DKSGTMTGGG TRVKKGGMSS AITSDVSPAS VETCDKQVQL EDTRYRQHLS ELESLNQRFT 840
  841 EISERIPSAE LEISKLQLDV SACDRLVAGE ERRILQLKSD LKSIRNNNER KRNLQNKISN 900
  901 MDKEVEAINI NNEGLVTEIK TLQDKIMEIG GIRYRIQKSK VDDLHEQLKF VKDKLNKMSF 960
  961 KKKKNEQRSQ SFQVELSNLT SEYDTTTESI ATLKTELQSL NKYVDEHKSR LREFENALWD1020
 1021 INSSIDELVK FIEFESKQMN SVKAERIELE NQIQEQRTAL SEVGNNENKY LKLMSNLKLH1080
 1081 NLTEFCDQTT MDSTFPEYSE DELSSVDKSE LVSNISVLKK KTEDREVDIN VLSEYRRCNK1140
 1141 EAEKRDSDYQ SELQKRTDLK KVVTDLQSQR LDEFMYGFGI ISMKLKEMYQ IITMGGNAEL1200
 1201 ELVDSLDPFS EGVLFSVMPP KKSWKNISNL SGGEKTLSSL ALVFALHNYK PTPLYVMDEI1260
 1261 DAALDFKNVS IVANYIKERT KNAQFIVISL RSNMFELSSR LVGIYKTANM TKSVTINNKE1320
 1321 ILTD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ste13 No Comments Unpublished Data

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..121] MSA 3.689995 View MSA. No confident structure predictions are available.
    2 View Details [122..301] PSI-BLAST 16.522879 Sc Smc1hd:Scc1-C complex, ATPgS
    3 View Details [302..638] PSI-BLAST 11.09691 Heavy meromyosin subfragment
    4 View Details [639..802] FFAS03 4.1 Smc hinge domain
    5 View Details [803..1106] FFAS03 2.39 Tropomyosin
    6 View Details [1107..1162] deduced N/A No confident structure predictions are available.
    7 View Details [1163..1324] PSI-BLAST 17.39794 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  2.7707163143035 bayes_pls_golite062009
  • protein binding
    		•  1.2343536336523 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.56283355879326 bayes_pls_golite062009
  • protein heterodimerization activity
    		•  0.511272811276509 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.299763949828861 bayes_pls_golite062009
  • DNA secondary structure binding
    		•  0.284996962785104 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.248383422632029 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.235472660839816 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.233111707634177 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.210107708818734 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.155323194767055 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.101477244722795 bayes_pls_golite062009
  • ATPase activity
    		•  0.08869715759545 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle