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Protein Overview: sep11

General Information:
Name(s) found: sep11 / SPAC5D6.05 [Sanger Pombe]
Description(s) found:
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  • pir||T38961 hypothetical protein SPAC5D6.05 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|6066726|emb|CAB10853.2| mediator complex subunit Pmc6 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114276|ref|NP_593364.1| mediator complex subunit Pmc6 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|185177915|pdb|3C0T|A Chain A, Structure Of The Schizosaccharomyces Pombe Mediator Subcomplex Med8c18 [NCBI NR]
  • gi|18266741|sp|O14198.3|MED18_SCHPO RecName: Full=Mediator of RNA polymerase II transcription subunit 18; AltName: Full=Mediator complex subunit 18; AltName: Full=Cell separation protein sep11; AltName: Full=RNA polymerase II mediator complex protein pmc6 [NCBI NR]
  • mediator complex subunit Pmc6 [Sanger Pombe]
  • (O14198) Cell separation protein sep11 [Swiss-Prot]
  • Mediator of RNA polymerase II transcription subunit 18 OS=Schizosaccharomyces pombe GN=med18 PE=1 SV=3 [Swiss-Prot]
  • SEP11 PROTEIN; UNPUBLISHED; HYPOTHETICAL PROTEIN; SEQUENCE ORPHAN: O14198;Q96VF9; [pompepVF.fasta]
  • SEP11 PROTEIN; UNPUBLISHED; HYPOTHETICAL PROTEIN; SEQUENCE ORPHAN: CAC44901;O14198; [pompepV13]
  • Cell separation protein sep11 [pompep4896]
  • |sep11|pmc6|RNA polymerase II holoenzyme component (PMID 10625684) [pompepnew.fasta]
  • |sep11|pmc6|RNA polymerase II holoenzyme component (PMID 10625684)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|6066726|emb|CAB10853.2| SPAC5D6.05 [Schizosaccharomyces pombe]gi|18266741|sp|O14198|SEPB_SCHPO Cell separation protein sep11gi|7491182|pir||T38961 hypothetical protein SPAC5D6.05 - fission yeast (Schi [nrdb_11152004_Chlamydomonas]
  • |sep11|pmc6|RNA polymerase II holoenzyme component |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • |sep11|pmc6, med18|mediator complex subunit Pmc6|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC5D6.05 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • RNA polymerase II mediator complex subunit 18 (Cell separation protein sep11) (RNA polymerase II mediator complex protein pmc6) [nr-271106-contam.fasta]
  • hypothetical protein SPAC5D6.05 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Mediator of RNA polymerase II transcription subunit 18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=med18 PE=1 SV=3 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 207 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    mediator complex [IDALink to PubMed article][NAS]
    cytosol [IDALink to PubMed article]
    Biological Process: gene-specific transcription from RNA polymerase II promoter [ICLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [IEA]
    Molecular Function: protein binding [IPILink to PubMed article]
    RNA polymerase II transcription mediator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELYLLGVV PSRRFEAVVN SLSKTLDGPK TILEFWVVYR PKDVPPNLPR QPDSWLRLCS  60
   61 NIESHDETDT EWSKNTQWSM YLEGNSEPKR EDKCGIRPVN RAKLTNGSVT EFVEKMGYEF 120
  121 SHEYIIQGLE YFFFDTTVRI YQTLIPSQQR SIKPPFHPMN EEQPWILHVY THVADASNQV 180
  181 AMAKAEANLT KVKTLLSAFC DLKNVRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] FFAS03 4.82 No description for 2hzmB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle