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View Structure Prediction Details

Protein: sep11
Organism: Schizosaccharomyces pombe
Length: 207 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sep11.

Description E-value Query
Range
Subject
Range
gi|15027266 - gi|15027266|emb|CAC44901.1| sep11p [Schizosaccharomyces pombe]
385.0 [0..1] [172..1]
MED18_YARLI - Mediator of RNA polymerase II transcription subunit 18 OS=Yarrowia lipolytica (strain CLIB 122 / E 1...
MED18_YARLI - Mediator of RNA polymerase II transcription subunit 18 OS=Yarrowia lipolytica GN=SRB5 PE=3 SV=1
54.0 [0..1] [203..1]

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Predicted Domain #1
Region A:
Residues: [1-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELYLLGVV PSRRFEAVVN SLSKTLDGPK TILEFWVVYR PKDVPPNLPR QPDSWLRLCS  60
   61 NIESHDETDT EWSKNTQWSM YLEGNSEPKR EDKCGIRPVN RAKLTNGSVT EFVEKMGYEF 120
  121 SHEYIIQGLE YFFFDTTVRI YQTLIPSQQR SIKPPFHPMN EEQPWILHVY THVADASNQV 180
  181 AMAKAEANLT KVKTLLSAFC DLKNVRL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.82
Match: 2hzmB
Description: No description for 2hzmB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle