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Protein Overview: swa-PA

General Information:
Name(s) found: swa-PA / FBpp0070884 [FlyBase]
Description(s) found:
Found 25 descriptions.
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  • The gene swallow is referred to in FlyBase by the symbol Dmel\swa (CG3429, FBgn0003655). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:6257451..6259742. It has the cytological map location 5F4. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: regulation of pole plasm oskar mRNA localization; pole plasm mRNA localization; determination of anterior/posterior axis, embryo. 16 alleles are reported. The phenotypes of these alleles are annotated with 29 unique terms, many of which group under: embryonic abdomen; embryonic segment; anatomical structure; embryonic tagma; female germline cyst; organ system; blastoderm embryo; gamete; cleavage stage embryo; spindle. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 548 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pole plasm mRNA localization [IMP]
    regulation of pole plasm oskar mRNA localization [IGI]
    intracellular mRNA localization [NAS]
    anterior/posterior axis specification, embryo [IGI]
    bicoid mRNA localization [NAS][TAS]
    Molecular Function: mRNA binding [ISS][TAS]
    dynein binding [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQDESFPT DELFDQLNNL SSSGARNTWF AEHHKPAVFE RDTAPFLEIC YADPDFDADG  60
   61 DVANKSAKTC VSDPVGRDQE DEDDYDEDVD GDDHKLGCEK APLGSGRSSK AVSYQDIHSA 120
  121 YTKRRFQHVT SKVGQYIAEI QAQDQKRRNV KFAGFQRVNS MPESLTPTLQ QVYVHDGDFK 180
  181 VDKNCQTHSN SDSNYNSNSN NSSSSFDRLL AENESLQQKI NSLRVEAKRL QGFNEYVQER 240
  241 LDRKTDDFVK MKCNFETLRT ELSECQQKLR RQQDNSQHHF MYHIRSATSA KATQTDFLVD 300
  301 TIPASGNVLV TPHPLGDLTY NSSKGSIELA LLSVAPSARV AQNPVQVQRA IHPQSLDFSS 360
  361 VSTEADGSGS GEHRVETSSR ALVRRTPAPN NSETSQPSSN DSAIEVEAHE EERPSSRRQW 420
  421 EQQGELISPR QWGQHEGMYY FDKRNNRVIE VMGFNISQGR NQSHDTIHNQ SINDSQTRLL 480
  481 VHSMSMSHLE AHDHFRSKRT TLGSRMLRFL GPCVRCRNGD PLNRSNVTYK DGLPAMPEEE 540
  541 FVDQRNQR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..192] deduced N/A No confident structure predictions are available.
    2 View Details [193..410] deduced N/A No confident structure predictions are available.
    3 View Details [411..548] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle