YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: swa-PA
Organism: Drosophila melanogaster
Length: 548 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for swa-PA.

Description E-value Query
Range
Subject
Range
SWA_DROPS - (Q9U9I5) Protein swallow
843.0 [0..1] [539..1]

Back

Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQDESFPT DELFDQLNNL SSSGARNTWF AEHHKPAVFE RDTAPFLEIC YADPDFDADG  60
   61 DVANKSAKTC VSDPVGRDQE DEDDYDEDVD GDDHKLGCEK APLGSGRSSK AVSYQDIHSA 120
  121 YTKRRFQHVT SKVGQYIAEI QAQDQKRRNV KFAGFQRVNS MPESLTPTLQ QVYVHDGDFK 180
  181 VDKNCQTHSN SD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [193-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNYNSNSNNS SSSFDRLLAE NESLQQKINS LRVEAKRLQG FNEYVQERLD RKTDDFVKMK  60
   61 CNFETLRTEL SECQQKLRRQ QDNSQHHFMY HIRSATSAKA TQTDFLVDTI PASGNVLVTP 120
  121 HPLGDLTYNS SKGSIELALL SVAPSARVAQ NPVQVQRAIH PQSLDFSSVS TEADGSGSGE 180
  181 HRVETSSRAL VRRTPAPNNS ETSQPSSNDS AIEVEAHE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [411-548]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EERPSSRRQW EQQGELISPR QWGQHEGMYY FDKRNNRVIE VMGFNISQGR NQSHDTIHNQ  60
   61 SINDSQTRLL VHSMSMSHLE AHDHFRSKRT TLGSRMLRFL GPCVRCRNGD PLNRSNVTYK 120
  121 DGLPAMPEEE FVDQRNQR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle